Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0323
         (357 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g09140.1 68417.m01509 DNA mismatch repair protein MLH1 (MLH1)...   113   2e-26
At4g02460.1 68417.m00333 DNA mismatch repair protein, putative s...    63   5e-11
At4g35520.1 68417.m05049 DNA mismatch repair family protein simi...    47   4e-06
At3g01550.1 68416.m00085 triose phosphate/phosphate translocator...    31   0.23 
At3g13682.1 68416.m01728 amine oxidase family protein / SWIRM do...    27   4.9  
At5g03600.1 68418.m00319 GDSL-motif lipase/hydrolase family prot...    26   6.4  
At3g19553.1 68416.m02479 amino acid permease family protein weak...    26   8.5  
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ...    26   8.5  
At1g68170.1 68414.m07787 nodulin MtN21 family protein similar to...    26   8.5  

>At4g09140.1 68417.m01509 DNA mismatch repair protein MLH1 (MLH1)
           identical to MLH1 protein [Arabidopsis thaliana]
           GI:3893081
          Length = 737

 Score =  113 bits (273), Expect = 2e-26
 Identities = 53/87 (60%), Positives = 69/87 (79%)
 Frame = +2

Query: 95  STL*MNEPGIIRKLSEEVVNRIAAGEIVQRPANALKELIENSLDAKSTNIIITVKSGGLK 274
           +T+   EP  I++L E VVNRIAAGE++QRP +A+KEL+ENSLDA S++I + VK GGLK
Sbjct: 19  TTIVPREPPKIQRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADSSSISVVVKDGGLK 78

Query: 275 FLQIQDNGTGIRNEDLGIVCERFTTSK 355
            +Q+ D+G GIR EDL I+CER TTSK
Sbjct: 79  LIQVSDDGHGIRREDLPILCERHTTSK 105


>At4g02460.1 68417.m00333 DNA mismatch repair protein, putative
           similar to SP|P54278 PMS1 protein homolog 2 (DNA
           mismatch repair protein PMS2) {Homo sapiens}; contains
           Pfam profiles PF02518: ATPase, histidine kinase-, DNA
           gyrase B-, and HSP90-like domain protein, PF01119: DNA
           mismatch repair protein, C-terminal domain
          Length = 923

 Score = 63.3 bits (147), Expect = 5e-11
 Identities = 29/78 (37%), Positives = 52/78 (66%)
 Frame = +2

Query: 122 IIRKLSEEVVNRIAAGEIVQRPANALKELIENSLDAKSTNIIITVKSGGLKFLQIQDNGT 301
           +IR ++  V++RI +G+++   ++A+KEL+ENSLDA +T+I I ++  G  + Q+ DNG 
Sbjct: 16  LIRPINRNVIHRICSGQVILDLSSAVKELVENSLDAGATSIEINLRDYGEDYFQVIDNGC 75

Query: 302 GIRNEDLGIVCERFTTSK 355
           GI   +  ++  +  TSK
Sbjct: 76  GISPTNFKVLALKHHTSK 93


>At4g35520.1 68417.m05049 DNA mismatch repair family protein similar
           to SP|Q9UHC1 DNA mismatch repair protein Mlh3 (MutL
           protein homolog 3) {Homo sapiens}; contains Pfam
           profiles PF02518: ATPase, histidine kinase-, DNA gyrase
           B-, and HSP90-like domain protein, PF01119: DNA mismatch
           repair protein, C-terminal domain
          Length = 1151

 Score = 46.8 bits (106), Expect = 4e-06
 Identities = 27/77 (35%), Positives = 47/77 (61%)
 Frame = +2

Query: 125 IRKLSEEVVNRIAAGEIVQRPANALKELIENSLDAKSTNIIITVKSGGLKFLQIQDNGTG 304
           I+ L E V + + +G I+   A  ++EL+ NSLDA +T + I V       +++ D+G+G
Sbjct: 4   IKPLPEGVRHSMRSGIIMFDMARVVEELVFNSLDAGATKVSIFVGVVSCS-VKVVDDGSG 62

Query: 305 IRNEDLGIVCERFTTSK 355
           +  +DL ++ ER+ TSK
Sbjct: 63  VSRDDLVLLGERYATSK 79


>At3g01550.1 68416.m00085 triose phosphate/phosphate translocator,
           putative similar to SWISS-PROT:P52178 triose
           phosphate/phosphate translocator [Cauliflower]{Brassica
           oleracea}
          Length = 383

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = -1

Query: 357 SLDVVNLSHTIPKSSFLIPVPLSCICKNFK-PPDFTVIMMLVDLASKLFSISSFNALAGL 181
           +LD +NL   I   SF++ VPL+ +   FK  P    +     L+ K F I S   LAG+
Sbjct: 249 ALDNINLFSIITIISFILLVPLAILIDGFKVTPSHLQVATSQGLSVKEFCIMSL--LAGV 306

Query: 180 C 178
           C
Sbjct: 307 C 307


>At3g13682.1 68416.m01728 amine oxidase family protein / SWIRM
           domain-containing protein similar to polyamine oxidase
           isoform-1 [Homo sapiens] GI:14860862; contains Pfam
           profile:PF01593  Flavin containing amine oxidase
          Length = 746

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +2

Query: 140 EEVVNRIAAGEIVQRP-ANALKELIENSLDAKSTNIIITVKSGGLKFL 280
           E+  NR+    I+ R  AN +KEL ENS ++K + ++ T+   GLK +
Sbjct: 659 EDPTNRLQLYTILSREQANKIKELDENSNESKLSCLMNTL---GLKLM 703


>At5g03600.1 68418.m00319 GDSL-motif lipase/hydrolase family protein
           low similarity to family II lipase EXL3 [Arabidopsis
           thaliana] GI:15054386; contains Pfam profile PF00657:
           GDSL-like Lipase/Acylhydrolase
          Length = 322

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 182 RPANALKELIENSLDAKSTNIIITVKSGGLKFLQI 286
           RPA  LK L+E  +D    N+I+    GGL F +I
Sbjct: 150 RPAAGLKALVEKVVDNLRVNMIVL---GGLLFKKI 181


>At3g19553.1 68416.m02479 amino acid permease family protein weak
           similarity to aspartate/glutamate transporter 1 [Mus
           musculus] GI:21322754; contains Pfam profile PF00324:
           Amino acid permease
          Length = 479

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 267 PPDFTVIMMLVDLASKLFSISSFNALAGLC 178
           PP   VI+++V  A K F IS    + G C
Sbjct: 403 PPSLLVILVMVLAAPKTFLISGVIIVLGFC 432


>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
           protein
          Length = 561

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/57 (24%), Positives = 29/57 (50%)
 Frame = +2

Query: 173 IVQRPANALKELIENSLDAKSTNIIITVKSGGLKFLQIQDNGTGIRNEDLGIVCERF 343
           ++ +P+ A K L++++  A     ++   SGG + L + +    +  +DL  V E F
Sbjct: 252 VMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHINMSEDDLRKVFESF 308


>At1g68170.1 68414.m07787 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 356

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -1

Query: 309 LIPVPLSCICKNFKPPDFTVIMMLVDLASKLFS--ISSFNALAGLCTIS 169
           L  +P+  I +  K P+FT  +ML+ L S L    I S   + GL   S
Sbjct: 44  LFMIPICFIFQRKKRPEFTCRLMLLALLSGLLGVVIPSILTITGLALTS 92


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,813,777
Number of Sequences: 28952
Number of extensions: 119952
Number of successful extensions: 317
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 459356736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)