Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0322
(354 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0668 - 4882174-4884204 195 7e-51
07_01_0075 - 558829-560859 192 7e-50
08_01_0387 - 3426058-3426168,3426279-3426473,3426612-3426724,342... 37 0.005
01_03_0056 + 12089404-12090300,12090429-12090581,12090999-120911... 30 0.60
03_06_0371 + 33435936-33436472,33436554-33436741,33437146-334372... 27 5.6
02_04_0516 + 23593088-23593116,23593209-23593336,23593527-235937... 27 5.6
07_03_1494 - 26976654-26976749,26976945-26977001,26977644-269777... 26 7.4
02_02_0067 - 6509478-6509483,6510742-6511270,6512066-6512070,651... 26 9.8
>06_01_0668 - 4882174-4884204
Length = 676
Score = 195 bits (476), Expect = 7e-51
Identities = 85/117 (72%), Positives = 104/117 (88%)
Frame = +2
Query: 2 NFKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVKYTQQNFHDRLSR 181
NFK+I VVP KDFIDIILS+TQR+TPTVVHK Y ISRIR FY+RKVKYTQ NF+++LS
Sbjct: 5 NFKRITVVPPGKDFIDIILSRTQRQTPTVVHKGYSISRIRQFYMRKVKYTQSNFYEKLST 64
Query: 182 IIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYGD 352
+I +FP+LDD+HPFY DL++VLY+KDHYKL LGQ+NTAR++I +AKDY+RLLKYGD
Sbjct: 65 VIDDFPRLDDIHPFYGDLLHVLYNKDHYKLALGQINTARNIIAKIAKDYLRLLKYGD 121
>07_01_0075 - 558829-560859
Length = 676
Score = 192 bits (468), Expect = 7e-50
Identities = 84/117 (71%), Positives = 103/117 (88%)
Frame = +2
Query: 2 NFKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVKYTQQNFHDRLSR 181
NFK+I VVP KDFIDIILS+TQR+TPTVVHK Y ISRIR FY+RKVKYTQ NF+++LS
Sbjct: 5 NFKRITVVPPGKDFIDIILSRTQRQTPTVVHKGYAISRIRQFYMRKVKYTQSNFYEKLST 64
Query: 182 IIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYGD 352
+I +FP+LD +HPFY DL++VLY+KDHYKL LGQ+NTAR++I +AKDY+RLLKYGD
Sbjct: 65 VIDDFPRLDGIHPFYGDLLHVLYNKDHYKLALGQINTARNIIAKIAKDYLRLLKYGD 121
>08_01_0387 -
3426058-3426168,3426279-3426473,3426612-3426724,
3427121-3427157,3427270-3427341,3427849-3427962,
3428129-3428200,3428343-3428381,3429340-3429414,
3429561-3429674,3429749-3429813,3429927-3430047,
3430942-3431063,3431547-3431634
Length = 445
Score = 36.7 bits (81), Expect = 0.005
Identities = 24/109 (22%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Frame = +2
Query: 5 FKKIAVVPTAKDFIDIILSKTQRKTPTV-VHKHYKISRIRGFYIRKVKYTQQNFHDRLSR 181
F++I +V A D + K++ PT + K R +G +++ + L
Sbjct: 83 FQRIPMVMPATDILMSAQRKSRNVPPTKGIANIAKRERNKG--AKQLDALMKEISVPLRT 140
Query: 182 IIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDY 328
+ FPK D+HP+ L+ + + + +Y+ + +++ R I++V K +
Sbjct: 141 YTENFPKRRDLHPYERSLIELTFGEGYYEKVIARVDALRKKINSVGKQH 189
>01_03_0056 +
12089404-12090300,12090429-12090581,12090999-12091157,
12091575-12091734,12092185-12092201,12092682-12092798,
12092914-12093303
Length = 630
Score = 29.9 bits (64), Expect = 0.60
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Frame = +2
Query: 95 KHYK--ISRIRGFYIRKVKYTQQNFHDRLSRIIQEFPKLDDVHPFYADLMNVLYDKDHYK 268
K YK +S G+Y+ KV + +S + FP +D P ++ N L+D+ K
Sbjct: 423 KRYKELLSDSEGYYVPKVIDELSSKKVLMSEFVPGFP-IDKTDPNWS---NFLFDEPTRK 478
Query: 269 LGLGQLNTARHLIDNVAKDYVRLL 340
L AR DY+R++
Sbjct: 479 FNLIDFGAARDFPKRFVDDYLRMV 502
>03_06_0371 +
33435936-33436472,33436554-33436741,33437146-33437245,
33437360-33437545,33438977-33439186,33439772-33439959,
33440083-33440341
Length = 555
Score = 26.6 bits (56), Expect = 5.6
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Frame = +2
Query: 176 SRIIQEFPK-----LDDVHP--FYADLMNVLYDKDHYKLGLGQLNTARHLIDN 313
SR+I FP+ LD++ P Y + N++ D D Y L + + N A +DN
Sbjct: 366 SRLIWAFPRNVDAWLDNIIPRWLYHIVTNIVLDSDSYLLHIEERNFATVGLDN 418
>02_04_0516 +
23593088-23593116,23593209-23593336,23593527-23593714,
23593861-23593919,23594997-23595345,23596081-23596333,
23596404-23597476
Length = 692
Score = 26.6 bits (56), Expect = 5.6
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 77 TPTVVHKHYKISRIRGFYIRKVKYTQQNFHDRLSR 181
TP H H KI IRG Y++K + + H R SR
Sbjct: 161 TPLSGHGHTKIGVIRGVYLQKEQ--DKPGHSRYSR 193
>07_03_1494 -
26976654-26976749,26976945-26977001,26977644-26977712,
26977892-26977993,26978081-26978149,26979205-26979297,
26979908-26979959,26980549-26980635,26980720-26980802,
26980909-26981040,26981132-26981205,26981280-26981341,
26981428-26981513
Length = 353
Score = 26.2 bits (55), Expect = 7.4
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +2
Query: 101 YKISRIRGFYIRKVKYTQQNFHDRLSRIIQEFPKLDDVHPFYADLMNVLYDKDH 262
Y +SR+R +K YT++ F+D+ +I +E L H + L +L ++ H
Sbjct: 197 YAVSRLR----KKTGYTKKEFYDQAFKIYKEVNTL-MAHGDTSSLRKILTERMH 245
>02_02_0067 -
6509478-6509483,6510742-6511270,6512066-6512070,
6512523-6512651,6512769-6512879,6513794-6513906,
6515036-6515096
Length = 317
Score = 25.8 bits (54), Expect = 9.8
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -1
Query: 210 SSNFGNS*IILDSR-SWKFCWVYFTFLI*NPRILDI 106
+S FG +L ++ +WKF W +FT ++ IL I
Sbjct: 84 ASCFGGGGYLLPAKWTWKFSWPFFTQIVRIHYILSI 119
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,986,016
Number of Sequences: 37544
Number of extensions: 168140
Number of successful extensions: 349
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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