Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0322
         (354 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7927| Best HMM Match : No HMM Matches (HMM E-Value=.)               75   2e-14
SB_7100| Best HMM Match : zf-DBF (HMM E-Value=2.6e-09)                 29   0.82 
SB_16017| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-19)         28   1.9  
SB_38444| Best HMM Match : TMS_TDE (HMM E-Value=0)                     28   2.5  
SB_5246| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   2.5  
SB_21615| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.8  
SB_34845| Best HMM Match : CXC (HMM E-Value=0.03)                      26   7.7  
SB_18876| Best HMM Match : DUF1040 (HMM E-Value=2.9)                   26   7.7  

>SB_7927| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 555

 Score = 74.9 bits (176), Expect = 2e-14
 Identities = 32/40 (80%), Positives = 35/40 (87%)
 Frame = +2

Query: 197 PKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNV 316
           P   DVHPFYADLMNVLYDKDHYKL LGQ+NTAR+LID +
Sbjct: 13  PTAKDVHPFYADLMNVLYDKDHYKLALGQINTARNLIDKM 52



 Score = 28.7 bits (61), Expect = 1.4
 Identities = 12/13 (92%), Positives = 12/13 (92%)
 Frame = +2

Query: 2  NFKKIAVVPTAKD 40
          NFKKI VVPTAKD
Sbjct: 5  NFKKITVVPTAKD 17


>SB_7100| Best HMM Match : zf-DBF (HMM E-Value=2.6e-09)
          Length = 242

 Score = 29.5 bits (63), Expect = 0.82
 Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
 Frame = +2

Query: 23  VPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVKYTQQNFHDRLSRIIQEFPK 202
           V +A+DF+    S T R         +++ ++RG +I KV+   +N+   L + ++ +P+
Sbjct: 66  VISAEDFLKWAESNTSRAGTGKRQASHRVRKLRGAFI-KVEDQSRNYRP-LFKEMKSWPR 123

Query: 203 LD-DVHPFYADLMNVLYDKDHYKLGLGQLNTARHLI 307
           L+ D  P Y    +V   K   K    +   AR  +
Sbjct: 124 LNFDAPPGYGPFDDVTAPKTRAKSSSSEPRQARKCV 159


>SB_16017| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-19)
          Length = 879

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 18/36 (50%), Positives = 22/36 (61%)
 Frame = +3

Query: 78  LLQSFTSIIKYQEYVGFILEK*NIPSRTSTTDCPEL 185
           L++S+  IIK QE  GFI EK   PS  S  DC E+
Sbjct: 534 LMKSYDDIIKEQEARGFI-EK--APSTPSLNDCLEV 566


>SB_38444| Best HMM Match : TMS_TDE (HMM E-Value=0)
          Length = 1031

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 216 WTSSNFGNS*IILDSRSWKFCWV 148
           W S N GNS ++  SRSW   W+
Sbjct: 793 WYSPNEGNSSLLRLSRSWPAVWI 815


>SB_5246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +2

Query: 203 LDDVHPFYADLMNVLYDKDHYKLG---LGQLNTARHLI 307
           LDD   F  +L N L++++  KLG    G+L  A HL+
Sbjct: 483 LDDGRQFTTELFNTLHEEELAKLGGPSKGKLGQASHLL 520


>SB_21615| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 94  VNDCRSFPLCFR*NYVYKVLSCRD 23
           VN C  FP+C +     K+ SCRD
Sbjct: 38  VNRCNRFPICVKKVRKSKLQSCRD 61


>SB_34845| Best HMM Match : CXC (HMM E-Value=0.03)
          Length = 1397

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 14/29 (48%), Positives = 14/29 (48%)
 Frame = -3

Query: 145  FHFSNIKPTYS*YFIMLVNDCRSFPLCFR 59
            F  S   PT   Y   L ND  SF LCFR
Sbjct: 1300 FENSMENPTLVSYLQKLYNDKESFALCFR 1328


>SB_18876| Best HMM Match : DUF1040 (HMM E-Value=2.9)
          Length = 725

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 10/49 (20%), Positives = 23/49 (46%)
 Frame = +2

Query: 116 IRGFYIRKVKYTQQNFHDRLSRIIQEFPKLDDVHPFYADLMNVLYDKDH 262
           +R  ++       + F   + +I+ +FPK   +   Y  L + ++ K+H
Sbjct: 389 VRSSFVDTFDSCLKTFFSHIMKIVNDFPKSCGIEVLYTMLSSSIFVKNH 437


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,820,074
Number of Sequences: 59808
Number of extensions: 203274
Number of successful extensions: 410
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 548040812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)