Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0322
(354 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF036706-10|AAM97948.1| 633|Caenorhabditis elegans Hypothetical... 187 2e-48
AF036706-9|AAK39281.1| 681|Caenorhabditis elegans Hypothetical ... 187 2e-48
AL132853-3|CAB60438.1| 859|Caenorhabditis elegans Hypothetical ... 31 0.31
Z49888-2|CAA90061.1| 1071|Caenorhabditis elegans Hypothetical pr... 29 0.93
Z93375-3|CAB07565.3| 443|Caenorhabditis elegans Hypothetical pr... 27 2.8
AF016653-2|AAC48225.2| 914|Caenorhabditis elegans Patched relat... 26 6.6
U41994-13|AAK31527.2| 1425|Caenorhabditis elegans Neuronal symme... 26 8.7
L12018-5|AAU87822.1| 557|Caenorhabditis elegans Twik family of ... 26 8.7
>AF036706-10|AAM97948.1| 633|Caenorhabditis elegans Hypothetical
protein T07A9.9b protein.
Length = 633
Score = 187 bits (455), Expect = 2e-48
Identities = 76/117 (64%), Positives = 100/117 (85%)
Frame = +2
Query: 2 NFKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVKYTQQNFHDRLSR 181
NFK+I VP A++ D++LSKTQRKTPTVVH+ Y I RIR FY RK+K+ QQ HD+L++
Sbjct: 6 NFKRITCVPNAQELKDVVLSKTQRKTPTVVHRQYSIGRIRAFYARKIKFLQQTLHDKLTQ 65
Query: 182 IIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYGD 352
II EFPK++++HPFY+DLMN+LYD+DHYK+ LGQ+NTARHLID +A++YVRL+KY D
Sbjct: 66 IITEFPKMEEIHPFYSDLMNILYDRDHYKIALGQMNTARHLIDGIAREYVRLMKYAD 122
>AF036706-9|AAK39281.1| 681|Caenorhabditis elegans Hypothetical
protein T07A9.9a protein.
Length = 681
Score = 187 bits (455), Expect = 2e-48
Identities = 76/117 (64%), Positives = 100/117 (85%)
Frame = +2
Query: 2 NFKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVKYTQQNFHDRLSR 181
NFK+I VP A++ D++LSKTQRKTPTVVH+ Y I RIR FY RK+K+ QQ HD+L++
Sbjct: 6 NFKRITCVPNAQELKDVVLSKTQRKTPTVVHRQYSIGRIRAFYARKIKFLQQTLHDKLTQ 65
Query: 182 IIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYGD 352
II EFPK++++HPFY+DLMN+LYD+DHYK+ LGQ+NTARHLID +A++YVRL+KY D
Sbjct: 66 IITEFPKMEEIHPFYSDLMNILYDRDHYKIALGQMNTARHLIDGIAREYVRLMKYAD 122
>AL132853-3|CAB60438.1| 859|Caenorhabditis elegans Hypothetical
protein Y80D3A.7 protein.
Length = 859
Score = 30.7 bits (66), Expect = 0.31
Identities = 23/92 (25%), Positives = 39/92 (42%)
Frame = +2
Query: 65 TQRKTPTVVHKHYKISRIRGFYIRKVKYTQQNFHDRLSRIIQEFPKLDDVHPFYADLMNV 244
T T + HK + + G + Q+F + R FP L + F +++ +
Sbjct: 124 TYPTTELLGHKILLANNLYGVETHPKTHRIQSFSAVILRFFLTFPNLKPMTDFEHEIVKL 183
Query: 245 LYDKDHYKLGLGQLNTARHLIDNVAKDYVRLL 340
+YD Y L GQ+ + DN+ + VR L
Sbjct: 184 VYDSGKYPLIYGQVAS-----DNLVAEEVRRL 210
>Z49888-2|CAA90061.1| 1071|Caenorhabditis elegans Hypothetical
protein F47A4.5 protein.
Length = 1071
Score = 29.1 bits (62), Expect = 0.93
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 191 EFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDN 313
+FPK + Y D+++ D +H+ + G++ T HL+DN
Sbjct: 256 QFPKAELA---YYDIVSTDVDDEHFVIVAGKVTTDEHLMDN 293
>Z93375-3|CAB07565.3| 443|Caenorhabditis elegans Hypothetical
protein C38C6.5 protein.
Length = 443
Score = 27.5 bits (58), Expect = 2.8
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = +1
Query: 112 KNTWVLY*KSEIYPAELPR---PTVQNYSGIPK 201
KN + Y +I A PR P + NYSGIPK
Sbjct: 196 KNLDIKYSSQQIMKAFTPRFFHPIIANYSGIPK 228
>AF016653-2|AAC48225.2| 914|Caenorhabditis elegans Patched related
family protein 3 protein.
Length = 914
Score = 26.2 bits (55), Expect = 6.6
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +2
Query: 269 LGLGQLNTARHLIDNVAKDY 328
LG+ QLN H++D +++D+
Sbjct: 105 LGISQLNDTVHVLDTISRDF 124
>U41994-13|AAK31527.2| 1425|Caenorhabditis elegans Neuronal symmetry
protein 1 protein.
Length = 1425
Score = 25.8 bits (54), Expect = 8.7
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +2
Query: 2 NFKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVKYTQQNF-HDR 172
NF K +P A D +K + P + H H+ ISR R I K T+ HD+
Sbjct: 900 NFIKSCFLPEACDRPS---AKDLLQDPFIYHNHHSISRTRSGSINKKPATKIELNHDK 954
>L12018-5|AAU87822.1| 557|Caenorhabditis elegans Twik family of
potassium channelsprotein 7 protein.
Length = 557
Score = 25.8 bits (54), Expect = 8.7
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +2
Query: 128 YIRKVKYTQQNFHDRLSRIIQEFPKLDDVHPFYADLMNV-LYDKDHYKLGLGQLNTARHL 304
YIRK+ Y + D S + K+ V YA+LM + + L ++H+
Sbjct: 449 YIRKIHYFGRKIQDARSALAVVGGKVVLVSELYANLMQKRARNMSREAFIVENLYVSKHI 508
Query: 305 IDNVAKDYVRLLKYGD 352
I + D +R ++Y D
Sbjct: 509 IPFIPTD-IRCIRYID 523
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,245,490
Number of Sequences: 27780
Number of extensions: 163990
Number of successful extensions: 440
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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