Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0319
(421 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch... 37 0.001
SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces pomb... 34 0.010
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|... 34 0.010
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 27 0.90
SPBC16E9.17c |rem1||meiosis-specific cyclin Rem1|Schizosaccharom... 26 2.7
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 2.7
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 26 2.7
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 25 6.3
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 24 8.4
SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces ... 24 8.4
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 24 8.4
>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 411
Score = 37.1 bits (82), Expect = 0.001
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +1
Query: 286 QTEITPHMRRLVAEWMLEVCEDRGCQEEVFXLAISFLDRFLS 411
Q E+T MR ++ EW++E+ + E LA++ +DRFLS
Sbjct: 161 QKELTWKMREILNEWLVEIHSNFCLMPETLYLAVNIIDRFLS 202
>SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 415
Score = 33.9 bits (74), Expect = 0.010
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +1
Query: 244 EERYAVTANYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFXLAISFLDRFLSM 414
E + A NY +VQ EI R ++ +W+++V E LA++ +DRFLS+
Sbjct: 175 ERKLAPPPNYM-SVQQEIDWVTRHMLVDWIVQVQIHFRLLPETLFLAVNLIDRFLSI 230
>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
2|||Manual
Length = 482
Score = 33.9 bits (74), Expect = 0.010
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +1
Query: 286 QTEITPHMRRLVAEWMLEVCEDRGCQEEVFXLAISFLDRFLSM 414
Q E+ MR ++ +W++EV E LA++ +DRFLS+
Sbjct: 228 QKELAWKMRGILTDWLIEVHSRFRLLPETLFLAVNIIDRFLSL 270
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 27.5 bits (58), Expect = 0.90
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +3
Query: 9 NTTCNTPALAPDRSAVEHSAQNKSYPSRRVRDRSDKHGAVVR 134
N + T +AP ++ + + +YP+RR+ ++ K A+ R
Sbjct: 149 NASSYTTPMAPFTASFSNKVSHSAYPTRRLPSQAKKTSAIER 190
>SPBC16E9.17c |rem1||meiosis-specific cyclin
Rem1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 25.8 bits (54), Expect = 2.7
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 280 TVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFXLAISFLDRFLSM 414
+ Q MR V W++ V E L+I+ LDRFLS+
Sbjct: 165 SAQPYYVTEMRASVINWIVGVHTCINLLPESLFLSINVLDRFLSL 209
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.8 bits (54), Expect = 2.7
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -2
Query: 177 QPRCALATAGADAFRAQQLHVYPNGHVRVAKDMICSARS 61
+ RCAL TA D FR++ GH ++ I A S
Sbjct: 219 ESRCALHTAAKDPFRSKNSLRCNRGHSPLSSQQILPAIS 257
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 25.8 bits (54), Expect = 2.7
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +3
Query: 9 NTTCNTPALAPDRSAVEHSAQNKSYPSRRVRDRSDKHGAVVRGT 140
N+ +T + D +S QN ++ + +D H VVRG+
Sbjct: 319 NSNYSTTRVDNDPHVASYSPQNSNFDHQAAATTNDAHQNVVRGS 362
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 24.6 bits (51), Expect = 6.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3
Query: 419 AHMLKNRSRNDIASXKTSSWQPRSSHTSSIHSATR 315
+H+L R ND+ +S PRS+ IHS+ +
Sbjct: 77 SHLLSQR--NDLFLDSSSQRTPRSTRRGDIHSSVQ 109
>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 899
Score = 24.2 bits (50), Expect = 8.4
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -3
Query: 392 NDIASXKTS-SWQPRSSHTSSIHSAT 318
+DIAS S SW S + S+HSAT
Sbjct: 466 HDIASEPFSISWPQNPSISGSVHSAT 491
>SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 227
Score = 24.2 bits (50), Expect = 8.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 34 SLPTDQLSSTPRRTNHILRDAYVTVRINME 123
S P S + RRT+++LR AY + I +E
Sbjct: 181 SSPDAYSSGSSRRTSNVLRQAYKKLGIFVE 210
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 24.2 bits (50), Expect = 8.4
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +3
Query: 39 PDRSAVEHSAQNKSYPSRRVR 101
P R+ VEH +NK Y + ++
Sbjct: 1119 PSRTGVEHKEENKKYDNVNIQ 1139
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,396,735
Number of Sequences: 5004
Number of extensions: 20341
Number of successful extensions: 61
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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