Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0319
(421 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38228| Best HMM Match : No HMM Matches (HMM E-Value=.) 57 7e-09
SB_25383| Best HMM Match : Cyclin_N (HMM E-Value=0) 38 0.003
SB_33964| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.006
SB_16479| Best HMM Match : Cyclin_N (HMM E-Value=5.9e-23) 32 0.17
SB_16794| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.89
SB_5466| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_28218| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_37609| Best HMM Match : Extensin_2 (HMM E-Value=0.081) 28 3.6
SB_18552| Best HMM Match : DLH (HMM E-Value=0.037) 27 4.8
SB_4689| Best HMM Match : Dicty_CTDC (HMM E-Value=5.8) 27 6.3
SB_7241| Best HMM Match : Cyclin_N (HMM E-Value=2.4e-20) 27 8.3
SB_21539| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
>SB_38228| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 404
Score = 56.8 bits (131), Expect = 7e-09
Identities = 23/36 (63%), Positives = 31/36 (86%)
Frame = +1
Query: 307 MRRLVAEWMLEVCEDRGCQEEVFXLAISFLDRFLSM 414
MR+LVA WMLEVCE+ C+EEVF L++++LDR LS+
Sbjct: 1 MRKLVATWMLEVCEEERCEEEVFALSMNYLDRILSL 36
>SB_25383| Best HMM Match : Cyclin_N (HMM E-Value=0)
Length = 561
Score = 37.9 bits (84), Expect = 0.003
Identities = 17/57 (29%), Positives = 32/57 (56%)
Frame = +1
Query: 244 EERYAVTANYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFXLAISFLDRFLSM 414
EE Y+V+ Y Q E+ MR ++ +W+++V +E + +S +DRFL++
Sbjct: 157 EEHYSVSPTYMNN-QQEVNEKMRAILLDWLVQVHLKFRLLQETLYITMSIIDRFLAV 212
>SB_33964| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 416
Score = 37.1 bits (82), Expect = 0.006
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +1
Query: 286 QTEITPHMRRLVAEWMLEVCEDRGCQEEVFXLAISFLDRFLS 411
Q +I MR ++ +W++EV E+ + L ++++DRFLS
Sbjct: 216 QPDINNSMRAILVDWLVEVAEEYKLLPQTLYLTVNYIDRFLS 257
>SB_16479| Best HMM Match : Cyclin_N (HMM E-Value=5.9e-23)
Length = 392
Score = 32.3 bits (70), Expect = 0.17
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 286 QTEITPHMRRLVAEWMLEVCEDRGCQEEVFXLAISFLDRFL 408
Q E+T MR ++ +W++EV E E L + LD +L
Sbjct: 202 QKELTISMRAILVDWLVEVQESFELYHETLYLGVRVLDNYL 242
>SB_16794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1407
Score = 29.9 bits (64), Expect = 0.89
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +1
Query: 280 TVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFXLAISFLDRFLSM 414
T EITP + W+ + +D + F L IS L+RFLS+
Sbjct: 40 TEGNEITPSIYSNTTRWIWLLNQDFEYLPDTFSLTISLLNRFLSL 84
>SB_5466| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 496
Score = 29.5 bits (63), Expect = 1.2
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2
Query: 201 RVGCSSLRQPRCALATAGADAFRAQQLHVYPNGHVRVA 88
+ G +S+ P CA ATA + A ++ H P GHV ++
Sbjct: 243 KAGKNSVILPNCATATAASKAPKSTTAHA-PEGHVMIS 279
>SB_28218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 99 RDRSDKHGAVVRGTRQPRQWRGR 167
RDRS+K G VR +Q R+ RGR
Sbjct: 71 RDRSEKVGVFVRDLKQRRRQRGR 93
>SB_37609| Best HMM Match : Extensin_2 (HMM E-Value=0.081)
Length = 1617
Score = 27.9 bits (59), Expect = 3.6
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 72 NKSYPSRRVRDRSDKHGAVVRGTRQPRQWRGRTAAAA 182
+K+YP R+ R SD + GT R RG+ A +A
Sbjct: 882 HKTYPRRQQRSGSDGNAHHTEGTDSRRVLRGKGAGSA 918
>SB_18552| Best HMM Match : DLH (HMM E-Value=0.037)
Length = 388
Score = 27.5 bits (58), Expect = 4.8
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 12 TTCNTPALAPDRSAVEHSAQNKSYP-SRRVRDRS 110
TTC+T L+P R V H + + YP SR R +S
Sbjct: 227 TTCSTTILSPSRE-VSHGSIHVRYPGSRSTRSQS 259
>SB_4689| Best HMM Match : Dicty_CTDC (HMM E-Value=5.8)
Length = 530
Score = 27.1 bits (57), Expect = 6.3
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -2
Query: 114 YPNGHVRVAKDMICSARSARQLIGRERAPECC 19
YP+GH+RV I GR+ AP C
Sbjct: 359 YPDGHIRVIACTIAFGMGECGRAGRDGAPSTC 390
>SB_7241| Best HMM Match : Cyclin_N (HMM E-Value=2.4e-20)
Length = 279
Score = 26.6 bits (56), Expect = 8.3
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 307 MRRLVAEWMLEVCEDRGCQEEVFXLAISFLDRFL 408
+RR + +W+ + E G V LAI ++D F+
Sbjct: 60 IRRYLVDWLAVIGEKLGSSHGVVHLAIYYMDFFM 93
>SB_21539| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 26.6 bits (56), Expect = 8.3
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -2
Query: 123 LHVYPNGHVRVAK--DMICSARSARQLIGRERAPECCT 16
LH G++++A D +CS RS+ ++ R+ P CT
Sbjct: 57 LHFPVVGNLKLADLIDFLCSTRSSGRIPNRQPLPPLCT 94
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,028,466
Number of Sequences: 59808
Number of extensions: 195926
Number of successful extensions: 574
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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