Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0319
(421 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g47230.2 68414.m05229 cyclin, putative similar to cyclin A-li... 52 2e-07
At1g47230.1 68414.m05228 cyclin, putative similar to cyclin A-li... 52 2e-07
At5g11300.1 68418.m01319 cyclin, putative (CYC3b) similar to cyc... 47 5e-06
At1g47210.2 68414.m05226 cyclin family protein similar to A-type... 47 5e-06
At1g47210.1 68414.m05225 cyclin family protein similar to A-type... 47 5e-06
At5g43080.1 68418.m05259 cyclin, putative similar to A-type cycl... 46 8e-06
At1g47220.1 68414.m05227 cyclin, putative similar to cyclin A-li... 46 1e-05
At1g14750.1 68414.m01763 cyclin, putative (SDS) identical to cyc... 44 3e-05
At5g25380.1 68418.m03010 cyclin 3a (CYC3a) nearly identical to c... 41 4e-04
At1g44110.1 68414.m05095 cyclin, putative similar to mitotic cyc... 41 4e-04
At1g77390.1 68414.m09012 cyclin, putative similar to mitotic cyc... 40 7e-04
At5g06150.1 68418.m00684 cyclin 1b (CYC1b) identical to cyclin [... 37 0.006
At4g35620.1 68417.m05059 cyclin 2b (CYC2b) identical to cyclin 2... 36 0.008
At1g76310.1 68414.m08864 cyclin, putative similar to B-like cycl... 36 0.008
At4g37490.1 68417.m05305 G2/mitotic-specific cyclin (CYC1) / B-l... 36 0.011
At2g26760.1 68415.m03209 cyclin, putative similar to CYCB1-1 pro... 36 0.011
At2g17620.1 68415.m02038 cyclin, putative (CYC2a) similar to cyc... 36 0.015
At1g20610.1 68414.m02575 cyclin, putative similar to G2/mitotic-... 36 0.015
At3g11520.1 68416.m01404 cyclin, putative (CYC2) similar to cycl... 34 0.034
At1g34460.1 68414.m04281 cyclin, putative strong similarity to c... 34 0.034
At1g16330.1 68414.m01954 cyclin family protein similar to SP|P25... 31 0.24
At5g65420.1 68418.m08227 cyclin, putative similar to cyclin D2.1... 30 0.73
At4g37630.1 68417.m05323 cyclin family protein similar to SP|P42... 29 1.3
At5g62970.1 68418.m07901 F-box family protein contains F-box dom... 27 6.8
At5g10440.1 68418.m01210 cyclin family protein similar to cyclin... 27 6.8
At3g27200.1 68416.m03401 plastocyanin-like domain-containing pro... 27 6.8
At2g22490.1 68415.m02668 cyclin delta-2 (CYCD2) identical to SP|... 27 6.8
At1g78180.1 68414.m09110 mitochondrial substrate carrier family ... 27 6.8
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family... 27 6.8
>At1g47230.2 68414.m05229 cyclin, putative similar to cyclin A-like
protein [Nicotiana tabacum] GI:1064931, A-type cyclin
[Catharanthus roseus] GI:2190259; contains Pfam profiles
PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
C-terminal domain
Length = 370
Score = 51.6 bits (118), Expect = 2e-07
Identities = 20/49 (40%), Positives = 34/49 (69%)
Frame = +1
Query: 268 NYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFXLAISFLDRFLSM 414
+Y VQ+++TPHMR ++ +W++EV E+ + L IS++DRFLS+
Sbjct: 117 DYIEKVQSDLTPHMRAVLVDWLVEVAEEYKLVSDTLYLTISYVDRFLSV 165
>At1g47230.1 68414.m05228 cyclin, putative similar to cyclin A-like
protein [Nicotiana tabacum] GI:1064931, A-type cyclin
[Catharanthus roseus] GI:2190259; contains Pfam profiles
PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
C-terminal domain
Length = 369
Score = 51.6 bits (118), Expect = 2e-07
Identities = 20/49 (40%), Positives = 34/49 (69%)
Frame = +1
Query: 268 NYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFXLAISFLDRFLSM 414
+Y VQ+++TPHMR ++ +W++EV E+ + L IS++DRFLS+
Sbjct: 117 DYIEKVQSDLTPHMRAVLVDWLVEVAEEYKLVSDTLYLTISYVDRFLSV 165
>At5g11300.1 68418.m01319 cyclin, putative (CYC3b) similar to cyclin
3a [Arabidopsis thaliana] GI:509425; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain; identical to cDNA cyc3b mRNA
for cyclin 3b protein GI:728520
Length = 436
Score = 47.2 bits (107), Expect = 5e-06
Identities = 19/49 (38%), Positives = 31/49 (63%)
Frame = +1
Query: 265 ANYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFXLAISFLDRFLS 411
ANY VQ +I P MR+++ +W++EV +D + L ++ +DRFLS
Sbjct: 191 ANYMELVQRDIDPDMRKILIDWLVEVSDDYKLVPDTLYLTVNLIDRFLS 239
>At1g47210.2 68414.m05226 cyclin family protein similar to A-type
cyclin [Catharanthus roseus] GI:2190259; contains Pfam
profile PF00134: Cyclin, N-terminal domain
Length = 372
Score = 47.2 bits (107), Expect = 5e-06
Identities = 19/49 (38%), Positives = 31/49 (63%)
Frame = +1
Query: 268 NYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFXLAISFLDRFLSM 414
+Y VQ ++TP MR ++ +W++EV E+ E L +S +DRFLS+
Sbjct: 124 DYIEKVQKDVTPSMRGVLVDWLVEVAEEYKLGSETLYLTVSHIDRFLSL 172
>At1g47210.1 68414.m05225 cyclin family protein similar to A-type
cyclin [Catharanthus roseus] GI:2190259; contains Pfam
profile PF00134: Cyclin, N-terminal domain
Length = 192
Score = 47.2 bits (107), Expect = 5e-06
Identities = 19/49 (38%), Positives = 31/49 (63%)
Frame = +1
Query: 268 NYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFXLAISFLDRFLSM 414
+Y VQ ++TP MR ++ +W++EV E+ E L +S +DRFLS+
Sbjct: 124 DYIEKVQKDVTPSMRGVLVDWLVEVAEEYKLGSETLYLTVSHIDRFLSL 172
>At5g43080.1 68418.m05259 cyclin, putative similar to A-type cyclins
from [Nicotiana tabacum] GI:1064931, [Catharanthus
roseus] GI:2190259; contains Pfam profiles PF00134:
Cyclin, N-terminal domain, PF02984: Cyclin, C-terminal
domain
Length = 355
Score = 46.4 bits (105), Expect = 8e-06
Identities = 17/49 (34%), Positives = 33/49 (67%)
Frame = +1
Query: 268 NYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFXLAISFLDRFLSM 414
+Y +Q ++T +MR ++ +W++EV E+ + LA+S++DRFLS+
Sbjct: 107 DYIEKIQKDVTSNMRGVLVDWLVEVAEEYKLLSDTLYLAVSYIDRFLSL 155
>At1g47220.1 68414.m05227 cyclin, putative similar to cyclin A-like
protein [Nicotiana tabacum] GI:1064931, A-type cyclin
[Catharanthus roseus] GI:2190259; contains Pfam profiles
PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
C-terminal domain
Length = 327
Score = 46.0 bits (104), Expect = 1e-05
Identities = 18/49 (36%), Positives = 31/49 (63%)
Frame = +1
Query: 268 NYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFXLAISFLDRFLSM 414
+Y +Q +ITP R ++ +W++EV E+ E L +S++DRFLS+
Sbjct: 78 DYIEKIQEDITPSKRGVLVDWLVEVAEEFELVSETLYLTVSYIDRFLSL 126
>At1g14750.1 68414.m01763 cyclin, putative (SDS) identical to
cyclin-like protein [Arabidopsis thaliana] GI:20302467;
low similarity to SP|P30278 G2/mitotic-specific cyclin 2
(B-like cyclin) (CycMs2 {Medicago sativa}; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain
Length = 578
Score = 44.4 bits (100), Expect = 3e-05
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +1
Query: 289 TEITPHMRRLVAEWMLEVCEDRGCQEEVFXLAISFLDRFLS 411
T + P +R ++ +W+++ C D G Q+E L + LDRFLS
Sbjct: 380 TGLIPRLRSIMVQWIVKQCSDMGLQQETLFLGVGLLDRFLS 420
>At5g25380.1 68418.m03010 cyclin 3a (CYC3a) nearly identical to
cyclin 3a [Arabidopsis thaliana] GI:509425; contains
Pfam profiles PF00134: Cyclin, N-terminal domain,
PF02984: Cyclin, C-terminal domain
Length = 437
Score = 40.7 bits (91), Expect = 4e-04
Identities = 16/50 (32%), Positives = 30/50 (60%)
Frame = +1
Query: 262 TANYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFXLAISFLDRFLS 411
+ +Y VQ +I P MR ++ +W++EV E+ + L ++ +DRF+S
Sbjct: 191 STSYMVQVQRDIDPTMRGILIDWLVEVSEEYKLVSDTLYLTVNLIDRFMS 240
>At1g44110.1 68414.m05095 cyclin, putative similar to mitotic cyclin
a2-type [Glycine max] GI:857397, cyclin A-like protein
[Nicotiana tabacum] GI:1064927; contains Pfam profiles
PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
C-terminal domain
Length = 460
Score = 40.7 bits (91), Expect = 4e-04
Identities = 16/57 (28%), Positives = 32/57 (56%)
Frame = +1
Query: 241 TEERYAVTANYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFXLAISFLDRFLS 411
+E + +Y VQ ++ MR ++ +W++EV E+ E L ++++DR+LS
Sbjct: 205 SEAKKRPDVDYMERVQKDVNSSMRGILVDWLIEVSEEYRLVPETLYLTVNYIDRYLS 261
>At1g77390.1 68414.m09012 cyclin, putative similar to mitotic cyclin
a2-type [Glycine max] GI:857397; contains Pfam profiles
PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
C-terminal domain
Length = 442
Score = 39.9 bits (89), Expect = 7e-04
Identities = 15/48 (31%), Positives = 29/48 (60%)
Frame = +1
Query: 268 NYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFXLAISFLDRFLS 411
+Y Q+ I MR ++ +W++EV E+ E LA++++DR+L+
Sbjct: 198 DYMERTQSSINASMRSILIDWLVEVAEEYRLSPETLYLAVNYVDRYLT 245
>At5g06150.1 68418.m00684 cyclin 1b (CYC1b) identical to cyclin
[Arabidopsis thaliana] GI:1360646
Length = 445
Score = 36.7 bits (81), Expect = 0.006
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = +1
Query: 283 VQTEITPHMRRLVAEWMLEVCEDRGCQEEVFXLAISFLDRFLSMCA 420
+QTE+ MR ++ +W+LEV E L ++ +DRFLS+ A
Sbjct: 205 IQTEMNEKMRAILIDWLLEVHIKFELNLETLYLTVNIIDRFLSVKA 250
>At4g35620.1 68417.m05059 cyclin 2b (CYC2b) identical to cyclin 2b
protein [Arabidopsis thaliana] GI:509423
Length = 429
Score = 36.3 bits (80), Expect = 0.008
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = +1
Query: 247 ERYAVTANYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFXLAISFLDRFLS 411
ER++ + Q +I+ MR ++ +W++EV + E L ++ +DRFLS
Sbjct: 184 ERFSCVPLDYMAQQFDISDKMRAILIDWLIEVHDKFELMNETLFLTVNLIDRFLS 238
>At1g76310.1 68414.m08864 cyclin, putative similar to B-like cyclin
GI:780267 from (Medicago sativa); contains Pfam profiles
PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
C-terminal domain
Length = 431
Score = 36.3 bits (80), Expect = 0.008
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = +1
Query: 244 EERYAVTANYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFXLAISFLDRFLSM 414
E R V NY Q +I MR ++ +W++EV EE L I+ +DRFL++
Sbjct: 189 ECRSCVPPNYMEN-QHDINERMRGILFDWLIEVHYKFELMEETLYLTINLIDRFLAV 244
>At4g37490.1 68417.m05305 G2/mitotic-specific cyclin (CYC1) / B-like
cyclin (CYC1) identical to SP|P30183 G2/mitotic-specific
cyclin (B-like cyclin) {Arabidopsis thaliana}
Length = 428
Score = 35.9 bits (79), Expect = 0.011
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +1
Query: 286 QTEITPHMRRLVAEWMLEVCEDRGCQEEVFXLAISFLDRFLSM 414
Q +I MR ++ EW+++V E F L ++ LDRFLS+
Sbjct: 189 QPDINEKMRLILVEWLIDVHVRFELNPETFYLTVNILDRFLSV 231
>At2g26760.1 68415.m03209 cyclin, putative similar to CYCB1-1
protein [Petunia x hybrida] GI:6093215, B-type cyclin
[Nicotiana tabacum] GI:849074; contains Pfam profiles
PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
C-terminal domain
Length = 387
Score = 35.9 bits (79), Expect = 0.011
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = +1
Query: 241 TEERYAVTANYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFXLAISFLDRFLSM 414
T E +Y G+ Q EI MR ++ +W+++V E L I+ +DRFLS+
Sbjct: 140 TVEEEGGIKDYIGS-QPEINEKMRSILIDWLVDVHRKFELMPETLYLTINLVDRFLSL 196
>At2g17620.1 68415.m02038 cyclin, putative (CYC2a) similar to cyclin
2b protein [Arabidopsis thaliana] GI:509423; contains
Pfam profiles PF00134: Cyclin, N-terminal domain,
PF02984: Cyclin, C-terminal domain; identical to cDNA
cyc2a mRNA for cyclin 2a protein GI:728518
Length = 429
Score = 35.5 bits (78), Expect = 0.015
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +1
Query: 241 TEERYAVTANYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFXLAISFLDRFLS 411
T ER++ + Q ++ MR ++ +W++EV + E L ++ +DRFLS
Sbjct: 181 TMERFSCVPVDYMMQQIDLNEKMRAILIDWLIEVHDKFDLINETLFLTVNLIDRFLS 237
>At1g20610.1 68414.m02575 cyclin, putative similar to
G2/mitotic-specific cyclins (B-like cyclin) from
{Medicago varia} SP|P46278, SP|P46277; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain
Length = 429
Score = 35.5 bits (78), Expect = 0.015
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +1
Query: 244 EERYAVTANYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFXLAISFLDRFLSM 414
E+ V NY Q ++ MR ++ +W++EV EE L I+ +DRFL++
Sbjct: 189 EKLSCVPPNYMDN-QQDLNERMRGILIDWLIEVHYKFELMEETLYLTINVIDRFLAV 244
>At3g11520.1 68416.m01404 cyclin, putative (CYC2) similar to cyclin
[Arabidopsis thaliana] GI:1360646; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain; identical to cDNA cyclin box
(cyc2) partial cds GI:456019
Length = 414
Score = 34.3 bits (75), Expect = 0.034
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 286 QTEITPHMRRLVAEWMLEVCEDRGCQEEVFXLAISFLDRFLSM 414
Q EI MR ++ +W++EV E L ++ +DRFLS+
Sbjct: 183 QPEIDEKMRSILIDWLVEVHVKFDLSPETLYLTVNIIDRFLSL 225
>At1g34460.1 68414.m04281 cyclin, putative strong similarity to
cyclin [Arabidopsis thaliana] GI:1360646
Length = 504
Score = 34.3 bits (75), Expect = 0.034
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +1
Query: 283 VQTEITPHMRRLVAEWMLEVCEDRGCQEEVFXLAISFLDRFL 408
+QTE+ MR ++ +W+LEV E L ++ +DRFL
Sbjct: 295 IQTEMNEKMRAILIDWLLEVHIKFELNLETLYLTVNIIDRFL 336
>At1g16330.1 68414.m01954 cyclin family protein similar to SP|P25011
G2/mitotic-specific cyclin S13-6 (B-like cyclin)
{Glycine max}; contains Pfam profiles PF00134: Cyclin,
N-terminal domain, PF02984: Cyclin, C-terminal domain
Length = 396
Score = 31.5 bits (68), Expect = 0.24
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +1
Query: 241 TEERYAVTANYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFXLAISFLDRFLS 411
T E ++ + E++P R ++ W++EV E L + LDR+LS
Sbjct: 153 TAEALNPALGHYLSAHAEVSPVTRGILINWLIEVHFKFDLMHETLYLTMDLLDRYLS 209
>At5g65420.1 68418.m08227 cyclin, putative similar to cyclin D2.1
protein [Nicotiana tabacum] GI:4160298; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain
Length = 308
Score = 29.9 bits (64), Expect = 0.73
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 310 RRLVAEWMLEVCEDRGCQEEVFXLAISFLDRFLSM 414
RR W+ + CE F LA+++LDRFLS+
Sbjct: 78 RRDALNWIWKACEVHQFGPLCFCLAMNYLDRFLSV 112
>At4g37630.1 68417.m05323 cyclin family protein similar to SP|P42753
Cyclin delta-3 {Arabidopsis thaliana}; contains Pfam
profile PF00134: Cyclin, N-terminal domain
Length = 323
Score = 29.1 bits (62), Expect = 1.3
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 274 FGTVQTEITPHMRRLVA-EWMLEVCEDRGCQEEVFXLAISFLDRFL 408
F T+ ++ T RL+A +W+L G Q + +AIS+ D FL
Sbjct: 59 FETLPSKTTSSSDRLIAIDWILTTRTRFGFQHQTAYIAISYFDLFL 104
>At5g62970.1 68418.m07901 F-box family protein contains F-box domain
Pfam:PF00646
Length = 449
Score = 26.6 bits (56), Expect = 6.8
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +1
Query: 19 ATLRRSLPTDQLSSTPRRTNHILRDA-YVTVRINMELLCAERVSPGSGEGAPRL 177
A L R+L T + T + N+IL D +V ++++L ERV+ G GE RL
Sbjct: 144 ALLPRNLYTCKSLVTLKLRNNILVDVPHVFSLPSLKILHLERVTYGDGESLQRL 197
>At5g10440.1 68418.m01210 cyclin family protein similar to cyclin
D2.1 protein [Nicotiana tabacum] GI:4160298; contains
Pfam profile PF00134: Cyclin, N-terminal domain
Length = 298
Score = 26.6 bits (56), Expect = 6.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 328 WMLEVCEDRGCQEEVFXLAISFLDRFLSM 414
W+ + CE+ LA+++LDRFLS+
Sbjct: 75 WIWKACEELQFGPLCICLAMNYLDRFLSV 103
>At3g27200.1 68416.m03401 plastocyanin-like domain-containing
protein contains similarity to uclacyanin I GI:3399767
GB:AAC32038 from [Arabidopsis thaliana]
Length = 174
Score = 26.6 bits (56), Expect = 6.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 327 LGDETAHVRCDLGLHSAEVVSGDGIALL 244
LG ETA+ CDLG + SG+ + L
Sbjct: 68 LGSETAYKSCDLGTSVNSLSSGNDVVKL 95
>At2g22490.1 68415.m02668 cyclin delta-2 (CYCD2) identical to
SP|P42752 Cyclin delta-2 {Arabidopsis thaliana}
Length = 361
Score = 26.6 bits (56), Expect = 6.8
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 307 MRRLVAEWMLEVCEDRGCQEEVFXLAISFLDRFLS 411
+R +W+L+VC L++++LDRFL+
Sbjct: 96 VRNQALDWILKVCAHYHFGHLCICLSMNYLDRFLT 130
>At1g78180.1 68414.m09110 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 342
Score = 26.6 bits (56), Expect = 6.8
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Frame = +3
Query: 30 ALAPDRSAVEHS---AQNKSYPSRRVRDRSDKHGAVVRGTRQPRQ--WRGRTAAAAS 185
+L+ DRS + AQN P + R RS G RGT R+ W G AA S
Sbjct: 6 SLSKDRSEQQCKKALAQNDEIPGKDNRKRSVIGGVRRRGTMNTRKHLWAGAVAAMVS 62
>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1696
Score = 26.6 bits (56), Expect = 6.8
Identities = 12/48 (25%), Positives = 22/48 (45%)
Frame = +1
Query: 40 PTDQLSSTPRRTNHILRDAYVTVRINMELLCAERVSPGSGEGAPRLPQ 183
P D LSS+PR + + + +V ++ E++ G R P+
Sbjct: 1157 PCDSLSSSPRLSRPLRSEIHVASMVDETSKSIEKIESSGGTSEHRTPE 1204
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,790,118
Number of Sequences: 28952
Number of extensions: 123629
Number of successful extensions: 387
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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