Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0314
         (430 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    24   0.53 
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   3.8  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   5.0  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    20   8.7  

>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 24.2 bits (50), Expect = 0.53
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +1

Query: 226 RPRTTSFAEGSKSVRKTFDNQPPKPPLGGVKISSKDGSKVTTVVAT 363
           RP +T  A+GSK V+ T     PKP     + S+    + TTV  T
Sbjct: 414 RPPSTPSADGSKPVQTT-----PKPGQWVPEKSTSTTQRTTTVSTT 454


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = +3

Query: 345 DDCGSDAGAGP*PDSGSELC 404
           D C S    GP P    ELC
Sbjct: 169 DSCDSKKKKGPTPRQQEELC 188


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +3

Query: 138 CECKGGNEKC 167
           C C+ GN KC
Sbjct: 696 CFCENGNNKC 705


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -1

Query: 256 CPRRMTWS*G 227
           CP+RM W  G
Sbjct: 8   CPKRMKWEGG 17


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,661
Number of Sequences: 336
Number of extensions: 1573
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9460170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)