Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0314
         (430 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   1.2  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    26   2.2  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    26   2.9  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    25   3.8  
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    25   5.0  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    25   6.6  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   6.6  
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    24   8.7  

>SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -2

Query: 168 HISRYHPCTRTELTTLSNTNSMKKYLKQYHYYEI-KNQNKIVPL 40
           +I+R H  + TEL  LS+   + ++L   +  E  KN+ K   L
Sbjct: 194 YINRVHRSSETELVQLSSIKVLDRFLSDIYLVEAEKNEEKCTVL 237


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 553

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -2

Query: 96 YLKQYHYYEIKNQNKIVPLQNYSIILIFFKIY 1
          Y+  Y  Y IKN   ++P  +  ++++F  +Y
Sbjct: 3  YINFYELYNIKNIRPLIPSFHVCLLIMFLILY 34


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 284  LSKVFRTDLLPSANDVVLGRPL 219
            +SKV   D++  A DV++G P+
Sbjct: 1307 VSKVIGVDMISMATDVIMGNPI 1328


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 238 TSFAEGSKSVRKTFDNQPPKPPLGGVKISSKDGSKVT 348
           T+F+EG  SVR +FD  P +P       +S+   K+T
Sbjct: 557 TNFSEGVGSVRSSFD-FPDRPVSRRPSSTSRSSVKIT 592


>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 17/73 (23%), Positives = 31/73 (42%)
 Frame = +1

Query: 211 SIMSGRPRTTSFAEGSKSVRKTFDNQPPKPPLGGVKISSKDGSKVTTVVATPGQGPDRTQ 390
           SI++ +PR T F    +     FD+ PP  P    +   ++  ++       G+G +  +
Sbjct: 144 SILAEKPRVTRF--NIQWDNPDFDDAPPVQPDADEEEEEEEADEMEEEFDEEGEGDEEEE 201

Query: 391 EVSYADMKLIGNG 429
           E    D    G+G
Sbjct: 202 EEDDGDGDGEGDG 214


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -2

Query: 375 ALPRRRYHSRHL*AVLAANFYASERWFWRLIVES--LSNGFA 256
           A+ R   HS+HL   ++        WF  LI+++  LS+ FA
Sbjct: 825 AVQRVFEHSKHLYRKISTKSLEKANWFMALILDAMILSSSFA 866


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = -2

Query: 153  HPCTRTELTTLSNTNSM---KKYLKQYHYYEIKNQNKIVPLQNYSI 25
            H    T   T++NT S+    K  K+   Y++  ++KI+  QNY +
Sbjct: 1151 HSSLSTVDFTVNNTESLINSLKIFKKAGCYKLNVEHKIITYQNYEM 1196


>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 165 ISRYHPCTRTELTTLSNTNSMKKYLKQYHYYEIKN 61
           I+  H   R +L  LS T   ++  K+Y YY  +N
Sbjct: 425 ITFLHLLKRLQLQNLSITEVFEQMSKKYGYYTTQN 459


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,490,406
Number of Sequences: 5004
Number of extensions: 25226
Number of successful extensions: 78
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)