Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0314
         (430 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0399 - 2860692-2861241,2861330-2862171                           30   0.91 
05_07_0200 - 28368890-28369021,28369169-28369303,28369918-283699...    29   2.1  
10_08_0624 - 19345114-19346673                                         28   3.7  
03_03_0090 + 14367033-14367279,14367402-14368205,14368314-143700...    27   6.4  
09_02_0157 + 5083771-5083996,5084007-5084326,5085958-5086392,508...    27   8.5  

>06_01_0399 - 2860692-2861241,2861330-2862171
          Length = 463

 Score = 29.9 bits (64), Expect = 0.91
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 224 DALGPRHSPRAANPFERLSTIN 289
           D LGPR  PR   PFER+ +++
Sbjct: 199 DRLGPRRPPRVVKPFERVLSLD 220


>05_07_0200 -
           28368890-28369021,28369169-28369303,28369918-28369947,
           28370019-28370093,28370222-28370333,28370440-28370621,
           28370723-28370854,28372193-28373479
          Length = 694

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +1

Query: 226 RPRTTSFAEGSKSVRKTFDNQPPKPPLGGVKISSKDGSKVTTVVATPGQGP 378
           R R+ S +  + S        PP PP    K +S+  +  TT  + P  GP
Sbjct: 321 RSRSASPSPSTSSSGSAGPPAPPPPPPPAAKRTSRTSTPATTSSSAPASGP 371


>10_08_0624 - 19345114-19346673
          Length = 519

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = -2

Query: 426 VADQFHVSIAHFLSPVRALPRR 361
           VAD  H S AH  +PVRA  RR
Sbjct: 138 VADTLHPSRAHLFAPVRARVRR 159


>03_03_0090 +
           14367033-14367279,14367402-14368205,14368314-14370039,
           14370135-14370219,14370398-14370457,14370744-14370836
          Length = 1004

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -2

Query: 165 ISRYHPCTRTELTTLSNTNSMKKYLKQYHYYEIKNQNKI 49
           + +   CT TEL +   TN  +  +  YH   +++Q+ +
Sbjct: 467 VGKQPSCTSTELASRDGTNDSRVSIGHYHSTSMQSQSSL 505


>09_02_0157 +
           5083771-5083996,5084007-5084326,5085958-5086392,
           5087277-5087921
          Length = 541

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 309 SERWFWRLIVESLSNG 262
           ++ WFWR  V++ SNG
Sbjct: 519 AQHWFWRRFVDTASNG 534


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,850,625
Number of Sequences: 37544
Number of extensions: 184523
Number of successful extensions: 548
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)