Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0314
         (430 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36849| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   6e-10
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   1.2  
SB_5774| Best HMM Match : TLD (HMM E-Value=2.2e-07)                    28   3.8  
SB_21129| Best HMM Match : Pkinase (HMM E-Value=2.5e-07)               27   6.6  
SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_21203| Best HMM Match : MFS_1 (HMM E-Value=0.0055)                  27   8.7  

>SB_36849| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 634

 Score = 60.5 bits (140), Expect = 6e-10
 Identities = 29/40 (72%), Positives = 33/40 (82%), Gaps = 1/40 (2%)
 Frame = +1

Query: 313 VKIS-SKDGSKVTTVVATPGQGPDRTQEVSYADMKLIGNG 429
           +KIS  KDGSK+TTVVAT G  PDRTQE+SY D K+IGNG
Sbjct: 1   MKISRDKDGSKITTVVATTGSLPDRTQEISYTDTKVIGNG 40


>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 283  NQPPKPPLGGVKISSKDGSKVTTVVATPGQGPD 381
            +QPPKPP    ++  +DG+  T V + P    D
Sbjct: 1580 SQPPKPPTESPQVYDEDGNPSTAVKSEPNPSLD 1612


>SB_5774| Best HMM Match : TLD (HMM E-Value=2.2e-07)
          Length = 318

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +1

Query: 268 RKTFDNQPPKPPLGGVKISSKDGSKVTTVVATPGQGPDRTQEVSYAD 408
           R+TF N+P  P +   +   +D S     V  PG+G D+    SY+D
Sbjct: 10  RRTF-NKPWSPKVRWARTERRDESGTEEEVC-PGRGTDQLDTTSYSD 54


>SB_21129| Best HMM Match : Pkinase (HMM E-Value=2.5e-07)
          Length = 786

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 16/59 (27%), Positives = 25/59 (42%)
 Frame = +1

Query: 238 TSFAEGSKSVRKTFDNQPPKPPLGGVKISSKDGSKVTTVVATPGQGPDRTQEVSYADMK 414
           +S AE +  +       PP PP+     S      VTT  ++  +G D  Q   Y+ +K
Sbjct: 145 SSSAERTSDIWPRDPKHPPSPPVRQRPSSCPSTENVTTGSSSHVRGSDVAQPAQYSGLK 203


>SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2332

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 229  PRTTSFAEGSKSVRKTFDNQP-PKPPLGGVKISSKDGSKVTTVVATP 366
            P+T SF +G   ++K  +++P P+PP  GVK   +    V    ATP
Sbjct: 2146 PKTPSFVKGI--LKKDEESEPSPRPP--GVKFDMETLGTVAADTATP 2188


>SB_21203| Best HMM Match : MFS_1 (HMM E-Value=0.0055)
          Length = 554

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
 Frame = -2

Query: 162 SRYHPCTRTELTTLSNTNSMKKY----LKQYHYYEIKN----QNKIVPLQNYSIILIFFK 7
           S YHP    +   + + N  + Y    L++  YY +K     QNK   L  +S+ L+FF 
Sbjct: 58  SVYHPTVSGDEEMMIDENVDRNYERIPLRRKCYYAVKPGLHWQNKAFVLWTFSLGLVFFA 117

Query: 6   IY 1
           ++
Sbjct: 118 VF 119


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,108,029
Number of Sequences: 59808
Number of extensions: 192901
Number of successful extensions: 481
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)