Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0314
         (430 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL034393-5|CAA22311.1|  362|Caenorhabditis elegans Hypothetical ...    37   0.007
AF159950-1|AAD45354.1|  362|Caenorhabditis elegans GSK-3 protein.      37   0.007
U42436-2|AAL02470.2|  552|Caenorhabditis elegans Hypothetical pr...    29   1.1  
CU457741-2|CAM36343.1|  574|Caenorhabditis elegans Hypothetical ...    29   1.4  
U97008-2|AAB52309.1|  336|Caenorhabditis elegans Serpentine rece...    29   1.9  
Z75553-5|CAA99950.2|  533|Caenorhabditis elegans Hypothetical pr...    26   10.0 
AC024761-6|AAF59467.3|  599|Caenorhabditis elegans Hypothetical ...    26   10.0 
AC024761-5|AAU05550.1|  601|Caenorhabditis elegans Hypothetical ...    26   10.0 

>AL034393-5|CAA22311.1|  362|Caenorhabditis elegans Hypothetical
           protein Y18D10A.5 protein.
          Length = 362

 Score = 36.7 bits (81), Expect = 0.007
 Identities = 19/37 (51%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +1

Query: 322 SSKDGSKVTTVVATPG-QGPDRTQEVSYADMKLIGNG 429
           S K G +VT VVA+    G D+  E+SY D K+IGNG
Sbjct: 9   SLKSGKQVTMVVASVATDGVDQQVEISYYDQKVIGNG 45


>AF159950-1|AAD45354.1|  362|Caenorhabditis elegans GSK-3 protein.
          Length = 362

 Score = 36.7 bits (81), Expect = 0.007
 Identities = 19/37 (51%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +1

Query: 322 SSKDGSKVTTVVATPG-QGPDRTQEVSYADMKLIGNG 429
           S K G +VT VVA+    G D+  E+SY D K+IGNG
Sbjct: 9   SLKSGKQVTMVVASVATDGVDQQVEISYYDQKVIGNG 45


>U42436-2|AAL02470.2|  552|Caenorhabditis elegans Hypothetical
           protein C49H3.6a protein.
          Length = 552

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = +1

Query: 196 AVYSISIMSGRPR--TTSFAEGSKSVRKTFDNQPPKPPLGGVKISSKDGSKVTTVVATPG 369
           A+ S+++++  P   +T+ A+ S S+ +  +N PP  P+    ++    +  T VV+T  
Sbjct: 462 AIQSMNVVTASPPAYSTAMAKRSSSLPREANNNPPGAPIRRSTMNGGMHTSTTGVVSTRI 521

Query: 370 QGP 378
            GP
Sbjct: 522 AGP 524


>CU457741-2|CAM36343.1|  574|Caenorhabditis elegans Hypothetical
           protein C42C1.2 protein.
          Length = 574

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 325 SKDGSKVTTVVATPGQGPDRTQEVSYADMKLIGN 426
           + DGS+  +   TP     R QE++Y + +LIGN
Sbjct: 336 TSDGSRALSKDLTPASERKRLQELAYRNPELIGN 369


>U97008-2|AAB52309.1|  336|Caenorhabditis elegans Serpentine
           receptor, class h protein244 protein.
          Length = 336

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = -2

Query: 171 FHISRYHPCTRTELTTLS-NTNSM-KKYLKQYHYYEIKNQ-NKIVPLQNYSIILIFF 10
           F  + YH  TR +L TLS NT S+ +K+LK      +      ++PL  +  ++IF+
Sbjct: 214 FSFTLYHLLTRKKLMTLSANTLSIHEKFLKSVSIQSLSTAIIVLIPLLTFITVMIFW 270


>Z75553-5|CAA99950.2|  533|Caenorhabditis elegans Hypothetical
           protein ZC443.5 protein.
          Length = 533

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -2

Query: 123 LSNTNSMKKYLKQYHYYEIKNQNKIVPLQNYSIILIFFKI 4
           L++ NS  +YL  + +Y     + IV L    ++ I+F +
Sbjct: 475 LNSLNSRGRYLNTFQFYSFDIASSIVMLALLVLVFIYFTL 514


>AC024761-6|AAF59467.3|  599|Caenorhabditis elegans Hypothetical
           protein Y38C1AA.5a protein.
          Length = 599

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 271 KTFDNQPPKPPLGGVKISSKDGSKVTTVVATPG 369
           KT+  QPP         +SK+  + +T+VA+PG
Sbjct: 335 KTYREQPPTADAPFSSDNSKEIHETSTIVASPG 367


>AC024761-5|AAU05550.1|  601|Caenorhabditis elegans Hypothetical
           protein Y38C1AA.5b protein.
          Length = 601

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 271 KTFDNQPPKPPLGGVKISSKDGSKVTTVVATPG 369
           KT+  QPP         +SK+  + +T+VA+PG
Sbjct: 337 KTYREQPPTADAPFSSDNSKEIHETSTIVASPG 369


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,427,951
Number of Sequences: 27780
Number of extensions: 153998
Number of successful extensions: 469
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)