Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0314
         (430 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   1.1  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    23   1.1  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   1.9  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   1.9  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -2

Query: 81  HYYEIKNQNKIVPLQNYSIILIFFKIY 1
           HYY + +QN  V +++Y   ++   +Y
Sbjct: 166 HYYPLDSQNCTVEIESYGYTVLDVVMY 192


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 126 TLSNTNSMKKYLKQYHYYEIKNQNKIVPLQNY 31
           T+ N N+ K Y K+ +Y  I  +   VP+  Y
Sbjct: 322 TIHNNNNYKNYNKKLYYNIINIEQIPVPVPVY 353


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 129 TTLSNTNSMKKYLKQYHYYEIK 64
           T + NTN   KY+++Y+  E K
Sbjct: 199 TYIVNTNYSSKYMREYNDPEYK 220


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -2

Query: 126 TLSNTNSMKKYLKQYHYYEIKNQNKIVPLQNYSI 25
           T+ N N+ K      + Y   N NK +  +NY I
Sbjct: 89  TIHNNNNYKYNYNNKYNYNNNNYNKKLYYKNYII 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,630
Number of Sequences: 438
Number of extensions: 1999
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)