Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0306
         (420 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    22   2.8  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   2.8  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   3.7  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     20   8.5  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    20   8.5  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -2

Query: 260 VGLHLDFLSDKSGLRQSCYSAYYSNSYFRNSNIL 159
           VG++ D +  + G R S       +SY+  S ++
Sbjct: 103 VGMNKDAVQHERGPRNSTLRRQQMSSYYNESRVM 136


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -2

Query: 260 VGLHLDFLSDKSGLRQSCYSAYYSNSYFRNSNIL 159
           VG++ D +  + G R S       +SY+  S ++
Sbjct: 103 VGMNKDAVQHERGPRNSTLRRQQMSSYYNESRVM 136


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -1

Query: 372 FFINWSQFRV 343
           ++ NWSQ+RV
Sbjct: 92  YYTNWSQYRV 101


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 242 SQDEVLPNQPRQARNLQGLL 301
           SQD  + +     RN+QGLL
Sbjct: 282 SQDPSISSTETLLRNIQGLL 301


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 376 VFLHQLVPIPSSLVHLQLLWL 314
           + + + +P+P  LV  Q +WL
Sbjct: 448 MLIKETMPLPRKLVRGQDVWL 468


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,462
Number of Sequences: 336
Number of extensions: 1646
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9279512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)