Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0306
         (420 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    25   4.8  
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    25   4.8  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    25   6.3  

>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = -3

Query: 271 RLIW*DFILTSCRISQGSGNRVILRIIRTHILETQIFC--EISLVRNGIRN*TVKPTESR 98
           RLIW + +     +S   G    +   +T++ E    C  +IS   N I + + + TE+ 
Sbjct: 365 RLIWSELLFFDRMLSMSLGRPFAISNDQTNVHEPSNVCDIQISSQSNCIPDPSYERTEAS 424

Query: 97  LVLFKS 80
             +FK+
Sbjct: 425 FTIFKA 430


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 243 LLVG*VRAPAIVLFCVLFELIF 178
           LL+  +  PAI+L+ ++F LIF
Sbjct: 379 LLMNKIMFPAIILYLIMFYLIF 400


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -2

Query: 137 WNSKLNCKAY*ITTGFI*KFIQLIHQIFISKIFTNHL 27
           WN  L C  + + +    +F+QL  QI   K+F + +
Sbjct: 178 WNEFLKCLEWAVLSSLDSRFLQLSEQIRSIKLFDSSI 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,557,758
Number of Sequences: 5004
Number of extensions: 28750
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)