Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0306
         (420 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0008 - 9533424-9533475,9533526-9535344,9535599-9536364,955...    29   1.1  
12_02_0360 - 17966857-17966865,17966866-17966954,17967276-179673...    28   2.7  
01_02_0069 - 10813467-10813475,10813476-10813564,10813865-108139...    28   2.7  
03_05_1014 - 29687343-29687410,29688054-29688191,29689246-296892...    28   3.5  
02_05_1291 - 35516715-35517251,35517339-35518185,35518480-355190...    28   3.5  
02_02_0644 + 12593913-12595154                                         27   8.1  
02_02_0643 + 12590928-12592172,12592609-12592698                       27   8.1  

>10_06_0008 -
           9533424-9533475,9533526-9535344,9535599-9536364,
           9551969-9552097
          Length = 921

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +2

Query: 230 YPTRSQDEVLPNQPRQARNLQGLLRFEWKPQKLKMHQGTR 349
           YP  S  +  P QPR A   Q ++R   +PQ+ +  QGTR
Sbjct: 589 YPGGSSSQQQPQQPRSAPRPQFVVRVP-QPQQQQNQQGTR 627


>12_02_0360 -
           17966857-17966865,17966866-17966954,17967276-17967399,
           17967639-17967717,17968267-17968352,17968471-17968661,
           17970496-17970560,17971192-17971282,17971705-17971801,
           17971883-17972128,17972248-17972505
          Length = 444

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 15/37 (40%), Positives = 25/37 (67%)
 Frame = -2

Query: 317 ASIQTVKVLAGFLPASADLVGLHLDFLSDKSGLRQSC 207
           AS Q +KV++G + AS   V  HL+ +++K+GL+  C
Sbjct: 368 ASFQLLKVVSGGV-ASNQYVRTHLNQIAEKNGLQLVC 403


>01_02_0069 -
           10813467-10813475,10813476-10813564,10813865-10813988,
           10814227-10814305,10815298-10815388,10815808-10815904,
           10816197-10816241,10816369-10816464
          Length = 209

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 15/37 (40%), Positives = 25/37 (67%)
 Frame = -2

Query: 317 ASIQTVKVLAGFLPASADLVGLHLDFLSDKSGLRQSC 207
           AS Q +KV++G + AS   V  HL+ +++K+GL+  C
Sbjct: 133 ASFQLLKVVSGGV-ASNQYVRTHLNQIAEKNGLQLVC 168


>03_05_1014 -
           29687343-29687410,29688054-29688191,29689246-29689294,
           29689623-29689728,29690184-29690332,29690840-29690921,
           29691308-29691360,29691644-29691729,29691855-29691909,
           29692179-29692579,29693564-29693660,29694191-29694322,
           29694426-29694476,29694659-29694751,29694917-29694992,
           29695711-29695856,29696009-29696043,29696056-29696107,
           29696290-29696401,29696617-29696813,29697456-29697560,
           29697667-29697819,29698317-29698424,29698608-29698752,
           29699374-29699432,29701397-29701441,29701677-29701730,
           29701901-29702113,29702873-29702958,29704492-29704572,
           29704670-29704729,29705599-29705644,29706212-29706286,
           29706376-29706512,29708306-29708366,29708726-29708743,
           29709710-29709743,29709811-29709902,29709997-29710029
          Length = 1260

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 11/33 (33%), Positives = 23/33 (69%)
 Frame = -3

Query: 412 LSDSLGHLQGXCVFLHQLVPIPSSLVHLQLLWL 314
           +S ++G +   C+F+  ++ +P +LV +QLLW+
Sbjct: 809 ISSNIGEV--VCIFVAAVLGMPDTLVPVQLLWV 839


>02_05_1291 -
           35516715-35517251,35517339-35518185,35518480-35519009,
           35519092-35519529
          Length = 783

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 308 QTVKVLAGFLPASADLVGLHLDFLSDKSGLRQSC 207
           Q V  L+ FLP    +  LHL+FLS+K  ++  C
Sbjct: 579 QKVIRLSQFLPNVLSIRDLHLNFLSEKIWVQPEC 612


>02_02_0644 + 12593913-12595154
          Length = 413

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 308 EWKPQKLKMHQGTRNWDQLMKKD 376
           EW P  LK   G + W +++ KD
Sbjct: 176 EWAPPMLKWDSGFKIWQKMLPKD 198


>02_02_0643 + 12590928-12592172,12592609-12592698
          Length = 444

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 308 EWKPQKLKMHQGTRNWDQLMKKD 376
           +W PQ LK   G + W + + KD
Sbjct: 175 DWVPQMLKWDSGFKMWQKQLSKD 197


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,740,671
Number of Sequences: 37544
Number of extensions: 172228
Number of successful extensions: 323
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)