Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0306
         (420 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12315| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  

>SB_12315| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 528

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 308 EWKPQKLKMHQGTRNWDQLMKKDAXSLK 391
           EWKPQK+   + T N  Q  K+ + S K
Sbjct: 348 EWKPQKVSKQKQTTNNKQFSKESSSSSK 375


>SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = -2

Query: 329 SAFVASIQTVKVLAGFLPASADLVGLHLDFLSDKSGLRQSCYS-AYYSN-SYFRN 171
           S+  A +  V++L  ++    D+ GLH D ++  S    SC S +  SN S+F+N
Sbjct: 140 SSSPALVSDVRILPVYMYDKMDVEGLHRDAMTLASEFFSSCESRSVESNWSHFKN 194


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,233,463
Number of Sequences: 59808
Number of extensions: 198979
Number of successful extensions: 405
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)