Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0306
(420 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC060773-1|AAH60773.1| 642|Homo sapiens SOX5 protein protein. 31 2.1
AK074317-1|BAB85048.1| 763|Homo sapiens protein ( Homo sapiens ... 31 2.1
AB081589-1|BAC16234.1| 763|Homo sapiens L-SOX5 transcript A pro... 31 2.1
AB081588-1|BAC16233.1| 750|Homo sapiens L-SOX5 transcript B pro... 31 2.1
Z69881-1|CAA93737.1| 999|Homo sapiens adenosine triphosphatase,... 29 6.3
Y15724-1|CAA75739.1| 1029|Homo sapiens sarco/endoplasmic reticul... 29 6.3
DQ020202-1|AAY26396.1| 758|Homo sapiens oxidation resistance 1 ... 29 6.3
BC035729-1|AAH35729.1| 999|Homo sapiens ATPase, Ca++ transporti... 29 6.3
BC032710-1|AAH32710.1| 758|Homo sapiens oxidation resistance 1 ... 29 6.3
BC019691-1|AAH19691.1| 400|Homo sapiens Unknown (protein for IM... 29 6.3
AK124441-1|BAC85852.1| 477|Homo sapiens protein ( Homo sapiens ... 29 6.3
AK096148-1|BAC04711.1| 503|Homo sapiens protein ( Homo sapiens ... 29 6.3
AF068221-1|AAC24526.1| 496|Homo sapiens sarco-/endoplasmic reti... 29 6.3
AF068220-1|AAC24525.1| 998|Homo sapiens sarco-/endoplasmic reti... 29 6.3
>BC060773-1|AAH60773.1| 642|Homo sapiens SOX5 protein protein.
Length = 642
Score = 30.7 bits (66), Expect = 2.1
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 227 TYPTRSQDEVLPNQPRQARNLQGLLRFEWKPQKLKMHQG 343
T R +E++ N+P + +++ LL +WK + L M G
Sbjct: 132 TLKQRKMEELIKNEPEETPSIEKLLSKDWKDKLLAMGSG 170
>AK074317-1|BAB85048.1| 763|Homo sapiens protein ( Homo sapiens
cDNA FLJ23737 fis, clone HEP14950, highly similar to Mus
musculus mSox5L mRNA. ).
Length = 763
Score = 30.7 bits (66), Expect = 2.1
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 227 TYPTRSQDEVLPNQPRQARNLQGLLRFEWKPQKLKMHQG 343
T R +E++ N+P + +++ LL +WK + L M G
Sbjct: 145 TLKQRKMEELIKNEPEETPSIEKLLSKDWKDKLLAMGSG 183
>AB081589-1|BAC16234.1| 763|Homo sapiens L-SOX5 transcript A
protein.
Length = 763
Score = 30.7 bits (66), Expect = 2.1
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 227 TYPTRSQDEVLPNQPRQARNLQGLLRFEWKPQKLKMHQG 343
T R +E++ N+P + +++ LL +WK + L M G
Sbjct: 145 TLKQRKMEELIKNEPEETPSIEKLLSKDWKDKLLAMGSG 183
>AB081588-1|BAC16233.1| 750|Homo sapiens L-SOX5 transcript B
protein.
Length = 750
Score = 30.7 bits (66), Expect = 2.1
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 227 TYPTRSQDEVLPNQPRQARNLQGLLRFEWKPQKLKMHQG 343
T R +E++ N+P + +++ LL +WK + L M G
Sbjct: 132 TLKQRKMEELIKNEPEETPSIEKLLSKDWKDKLLAMGSG 170
>Z69881-1|CAA93737.1| 999|Homo sapiens adenosine triphosphatase,
calcium protein.
Length = 999
Score = 29.1 bits (62), Expect = 6.3
Identities = 11/33 (33%), Positives = 23/33 (69%)
Frame = -3
Query: 412 LSDSLGHLQGXCVFLHQLVPIPSSLVHLQLLWL 314
+S ++G + C+FL ++ +P +L+ +QLLW+
Sbjct: 765 ISSNVGEV--VCIFLTAILGLPEALIPVQLLWV 795
>Y15724-1|CAA75739.1| 1029|Homo sapiens sarco/endoplasmic reticulum
Ca2+ -ATPase protein.
Length = 1029
Score = 29.1 bits (62), Expect = 6.3
Identities = 11/33 (33%), Positives = 23/33 (69%)
Frame = -3
Query: 412 LSDSLGHLQGXCVFLHQLVPIPSSLVHLQLLWL 314
+S ++G + C+FL ++ +P +L+ +QLLW+
Sbjct: 765 ISSNVGEV--VCIFLTAILGLPEALIPVQLLWV 795
>DQ020202-1|AAY26396.1| 758|Homo sapiens oxidation resistance 1
protein.
Length = 758
Score = 29.1 bits (62), Expect = 6.3
Identities = 21/78 (26%), Positives = 34/78 (43%)
Frame = +1
Query: 139 YVLVISHKIFEFLKYEFE*YAE*HDCRSPDLSDKKSR*SPTKSAEAGKKPARTFTV*MEA 318
Y ++ KI E L + + + C S ++ + ++ +AG A T E
Sbjct: 185 YKEILDSKIKESLPIDIDQLSGRDFCHSKKMTGSNTEEIDSRIRDAGNDSASTAPRSTEE 244
Query: 319 TKAEDAPGNSELGPIDEE 372
+ +ED SEL PI EE
Sbjct: 245 SLSEDVFTESELSPIREE 262
>BC035729-1|AAH35729.1| 999|Homo sapiens ATPase, Ca++ transporting,
ubiquitous protein.
Length = 999
Score = 29.1 bits (62), Expect = 6.3
Identities = 11/33 (33%), Positives = 23/33 (69%)
Frame = -3
Query: 412 LSDSLGHLQGXCVFLHQLVPIPSSLVHLQLLWL 314
+S ++G + C+FL ++ +P +L+ +QLLW+
Sbjct: 765 ISSNVGEV--VCIFLTAILGLPEALIPVQLLWV 795
>BC032710-1|AAH32710.1| 758|Homo sapiens oxidation resistance 1
protein.
Length = 758
Score = 29.1 bits (62), Expect = 6.3
Identities = 21/78 (26%), Positives = 34/78 (43%)
Frame = +1
Query: 139 YVLVISHKIFEFLKYEFE*YAE*HDCRSPDLSDKKSR*SPTKSAEAGKKPARTFTV*MEA 318
Y ++ KI E L + + + C S ++ + ++ +AG A T E
Sbjct: 185 YKEILDSKIKESLPIDIDQLSGRDFCHSKKMTGSNTEEIDSRIRDAGNDSASTAPRSTEE 244
Query: 319 TKAEDAPGNSELGPIDEE 372
+ +ED SEL PI EE
Sbjct: 245 SLSEDVFTESELSPIREE 262
>BC019691-1|AAH19691.1| 400|Homo sapiens Unknown (protein for
IMAGE:4475675) protein.
Length = 400
Score = 29.1 bits (62), Expect = 6.3
Identities = 21/78 (26%), Positives = 34/78 (43%)
Frame = +1
Query: 139 YVLVISHKIFEFLKYEFE*YAE*HDCRSPDLSDKKSR*SPTKSAEAGKKPARTFTV*MEA 318
Y ++ KI E L + + + C S ++ + ++ +AG A T E
Sbjct: 185 YKEILDSKIKESLPIDIDQLSGRDFCHSKKMTGSNTEEIDSRIRDAGNDSASTAPRSTEE 244
Query: 319 TKAEDAPGNSELGPIDEE 372
+ +ED SEL PI EE
Sbjct: 245 SLSEDVFTESELSPIREE 262
>AK124441-1|BAC85852.1| 477|Homo sapiens protein ( Homo sapiens
cDNA FLJ42450 fis, clone BRACE2010489, moderately
similar to Mus musculus nucleolar protein C7 mRNA. ).
Length = 477
Score = 29.1 bits (62), Expect = 6.3
Identities = 21/78 (26%), Positives = 34/78 (43%)
Frame = +1
Query: 139 YVLVISHKIFEFLKYEFE*YAE*HDCRSPDLSDKKSR*SPTKSAEAGKKPARTFTV*MEA 318
Y ++ KI E L + + + C S ++ + ++ +AG A T E
Sbjct: 273 YKEILDSKIKESLPIDIDQLSGRDFCHSKKMTGSNTEEIDSRIRDAGNDSASTAPRSTEE 332
Query: 319 TKAEDAPGNSELGPIDEE 372
+ +ED SEL PI EE
Sbjct: 333 SLSEDVFTESELSPIREE 350
>AK096148-1|BAC04711.1| 503|Homo sapiens protein ( Homo sapiens
cDNA FLJ38829 fis, clone MAMGL1000083, weakly similar to
Drosophila melanogaster L82B (L82) mRNA. ).
Length = 503
Score = 29.1 bits (62), Expect = 6.3
Identities = 21/78 (26%), Positives = 34/78 (43%)
Frame = +1
Query: 139 YVLVISHKIFEFLKYEFE*YAE*HDCRSPDLSDKKSR*SPTKSAEAGKKPARTFTV*MEA 318
Y ++ KI E L + + + C S ++ + ++ +AG A T E
Sbjct: 206 YKEILDSKIKESLPIDIDQLSGRDFCHSKKMTGSNTEEIDSRIRDAGNDSASTAPRSTEE 265
Query: 319 TKAEDAPGNSELGPIDEE 372
+ +ED SEL PI EE
Sbjct: 266 SLSEDVFTESELSPIREE 283
>AF068221-1|AAC24526.1| 496|Homo sapiens sarco-/endoplasmic
reticulum Ca-ATPase 3 protein.
Length = 496
Score = 29.1 bits (62), Expect = 6.3
Identities = 11/33 (33%), Positives = 23/33 (69%)
Frame = -3
Query: 412 LSDSLGHLQGXCVFLHQLVPIPSSLVHLQLLWL 314
+S ++G + C+FL ++ +P +L+ +QLLW+
Sbjct: 232 ISSNVGEV--VCIFLTAILGLPEALIPVQLLWV 262
>AF068220-1|AAC24525.1| 998|Homo sapiens sarco-/endoplasmic
reticulum Ca-ATPase 3 protein.
Length = 998
Score = 29.1 bits (62), Expect = 6.3
Identities = 11/33 (33%), Positives = 23/33 (69%)
Frame = -3
Query: 412 LSDSLGHLQGXCVFLHQLVPIPSSLVHLQLLWL 314
+S ++G + C+FL ++ +P +L+ +QLLW+
Sbjct: 765 ISSNVGEV--VCIFLTAILGLPEALIPVQLLWV 795
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,385,413
Number of Sequences: 237096
Number of extensions: 969459
Number of successful extensions: 1750
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1750
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3202085264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -