Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0306
(420 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41270-3|ABC71846.1| 254|Caenorhabditis elegans Hypothetical pr... 31 0.44
AC024799-8|AAW88387.1| 297|Caenorhabditis elegans Hypothetical ... 28 2.4
AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical ... 28 3.1
AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical ... 28 3.1
U28991-12|AAA68386.2| 550|Caenorhabditis elegans Hypothetical p... 27 4.1
Z81583-6|CAB04674.1| 397|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z79753-3|CAB02088.1| 377|Caenorhabditis elegans Hypothetical pr... 27 5.5
AF022985-11|AAB69967.2| 650|Caenorhabditis elegans Hypothetical... 27 5.5
U41023-3|AAA82342.2| 435|Caenorhabditis elegans Arrestin family... 26 9.5
AY204185-1|AAO39189.1| 400|Caenorhabditis elegans nuclear recep... 26 9.5
AL022272-4|CAC42310.2| 391|Caenorhabditis elegans Hypothetical ... 26 9.5
>U41270-3|ABC71846.1| 254|Caenorhabditis elegans Hypothetical
protein AH9.3 protein.
Length = 254
Score = 30.7 bits (66), Expect = 0.44
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = +1
Query: 226 DLSDKKSR*SPTKSAEAGKKPARTFTV*MEATKAEDAPGNSELGPIDEERRXFLEDAL 399
DLS KK K+ EAG P T T E + + A N+E +D E+ +
Sbjct: 29 DLSVKKEVQEAVKTEEAGSSPKATTTTDGEVPEKDSADENAEKNQVDSMENPKTEEGI 86
>AC024799-8|AAW88387.1| 297|Caenorhabditis elegans Hypothetical
protein Y49C4A.2 protein.
Length = 297
Score = 28.3 bits (60), Expect = 2.4
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -1
Query: 342 PWCIFSFCGFHSNRKSPCRFLAC 274
P+ +F FC + S CRF C
Sbjct: 138 PFVLFGFCSYQMEIPSTCRFFGC 160
>AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical
protein Y38E10A.6b protein.
Length = 1345
Score = 27.9 bits (59), Expect = 3.1
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 253 SPTKSAEAGKKPARTFTV*MEATKAEDAPGNSELGPIDEERRXFLED 393
SP KS +A +KP + ++ KA + P E P E+R +++
Sbjct: 937 SPKKSEKAPEKPQEIQEIPKKSEKAPEKPQEIEKSPKKSEKRQEIQE 983
>AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical
protein Y38E10A.6a protein.
Length = 1343
Score = 27.9 bits (59), Expect = 3.1
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 253 SPTKSAEAGKKPARTFTV*MEATKAEDAPGNSELGPIDEERRXFLED 393
SP KS +A +KP + ++ KA + P E P E+R +++
Sbjct: 935 SPKKSEKAPEKPQEIQEIPKKSEKAPEKPQEIEKSPKKSEKRQEIQE 981
>U28991-12|AAA68386.2| 550|Caenorhabditis elegans Hypothetical
protein F08F8.2 protein.
Length = 550
Score = 27.5 bits (58), Expect = 4.1
Identities = 20/59 (33%), Positives = 27/59 (45%)
Frame = -2
Query: 359 GPNSEFPGASSAFVASIQTVKVLAGFLPASADLVGLHLDFLSDKSGLRQSCYSAYYSNS 183
GPN E PG ++ +A + VLAG L A L L +S L +S Y +S
Sbjct: 454 GPNKEQPGQNAERLAEVIAATVLAGELSLMAALTTNEL--VSSHMKLNRSKQQLYADDS 510
>Z81583-6|CAB04674.1| 397|Caenorhabditis elegans Hypothetical
protein T02G6.6 protein.
Length = 397
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 393 IFKEXASFFINWSQFRVPWCIFSFCGFHSNR 301
+FK+ F N+S FR P FS FH++R
Sbjct: 124 LFKKQCKFHFNYSTFRAP---FSGKSFHASR 151
>Z79753-3|CAB02088.1| 377|Caenorhabditis elegans Hypothetical
protein F20G2.3 protein.
Length = 377
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 260 PNQPRQARNLQGLLRFEWKPQKLKMHQGT 346
P P + RN +L EW+ + LKM +G+
Sbjct: 204 PLLPERTRNKCNILNSEWRVEVLKMAEGS 232
>AF022985-11|AAB69967.2| 650|Caenorhabditis elegans Hypothetical
protein T15B7.14 protein.
Length = 650
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 396 GIFKEXASFFINWSQFRVPWCIFSFCGFHSNR 301
GIF++ F+I + + W I++FC F +R
Sbjct: 86 GIFRKSTLFYIAVAVCYLYWLIYTFCTFKFSR 117
>U41023-3|AAA82342.2| 435|Caenorhabditis elegans Arrestin family
protein 1 protein.
Length = 435
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = +3
Query: 87 NKTSRDSVGFTVQFRIPLR 143
+KTS++S+G VQ+R+ +R
Sbjct: 322 SKTSKESLGIVVQYRVKVR 340
>AY204185-1|AAO39189.1| 400|Caenorhabditis elegans nuclear receptor
NHR-101 protein.
Length = 400
Score = 26.2 bits (55), Expect = 9.5
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +3
Query: 9 PCCKRF*MICKNFR-NKYLMNQLDKLLNKTSRDSVGFTVQFRIPLRTSDIS 158
P K C+ R K + +DK + SRD +G+T + R P +T D+S
Sbjct: 59 PVDKSIRCACRFCRFEKCIQVGMDKSALQASRDRIGYTKRTRKP-KTKDVS 108
>AL022272-4|CAC42310.2| 391|Caenorhabditis elegans Hypothetical
protein H12C20.6a protein.
Length = 391
Score = 26.2 bits (55), Expect = 9.5
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +3
Query: 9 PCCKRF*MICKNFR-NKYLMNQLDKLLNKTSRDSVGFTVQFRIPLRTSDIS 158
P K C+ R K + +DK + SRD +G+T + R P +T D+S
Sbjct: 50 PVDKSIRCACRFCRFEKCIQVGMDKSALQASRDRIGYTKRTRKP-KTKDVS 99
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,562,766
Number of Sequences: 27780
Number of extensions: 159950
Number of successful extensions: 452
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -