Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0306
         (420 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   3.2  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   7.5  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   7.5  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    20   9.9  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    20   9.9  

>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 227 SGLRQSCYSAYYSNSYFRNSN 165
           S L  SC    YSN+Y+ N+N
Sbjct: 305 SSLSNSCN---YSNNYYNNNN 322


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 239 RSQDEVLPNQPRQARNLQGLLRFEWKPQKLKMHQG 343
           +SQ  + P Q +QA+  QG++      Q+    QG
Sbjct: 216 QSQPGMHPRQQQQAQQHQGVVTSPLSQQQQAAPQG 250


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 127 FEFHYVLVISHKIFEFLKYE 186
           F+FH +L  ++ IFE +  E
Sbjct: 256 FKFHSILNRTNNIFELVTVE 275


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 246 KMKSYQISRGRQETCKDFYG 305
           KM+ YQ+ +  +E   DF G
Sbjct: 46  KMREYQLGQFLRERYGDFLG 65


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 246 KMKSYQISRGRQETCKDFYG 305
           KM+ YQ+ +  +E   DF G
Sbjct: 61  KMREYQLGQFLRERYGDFLG 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,046
Number of Sequences: 438
Number of extensions: 2004
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)