Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0306
         (420 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g28510.1 68418.m03470 glycosyl hydrolase family 1 protein con...    29   0.97 
At1g66280.1 68414.m07527 glycosyl hydrolase family 1 protein con...    29   1.3  
At1g66270.2 68414.m07524 beta-glucosidase (PSR3.2) nearly identi...    29   1.3  
At1g66270.1 68414.m07523 beta-glucosidase (PSR3.2) nearly identi...    29   1.3  
At1g04050.1 68414.m00392 SET domain-containing protein / suppres...    29   1.7  
At4g08910.1 68417.m01468 expressed protein                             27   3.9  
At1g10130.1 68414.m01142 calcium-transporting ATPase 3, endoplas...    27   3.9  
At4g34900.1 68417.m04949 xanthine dehydrogenase, putative simila...    27   6.8  
At1g45403.1 68414.m05196 membrane protein                              27   6.8  

>At5g28510.1 68418.m03470 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to beta-glucosidase 1 (GI:12043529) [Arabidopsis
           thaliana]
          Length = 533

 Score = 29.5 bits (63), Expect = 0.97
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 393 IFKEXASFFINWSQFRVPWCIFSFCGFHSNRKSPCR 286
           +FKE      +W  F  PW +F+  G+   +K+P R
Sbjct: 191 VFKEYGGKVKHWITFNEPW-VFAHAGYDVGKKAPGR 225


>At1g66280.1 68414.m07527 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to beta-glucosidase 1 (GI:12043529) [Arabidopsis
           thaliana]
          Length = 524

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 393 IFKEXASFFINWSQFRVPWCIFSFCGFHSNRKSPCR 286
           +F E      NW  F  PW +F+  G+   +K+P R
Sbjct: 188 VFTEYGGKVKNWITFNEPW-VFAHAGYDVGKKAPGR 222


>At1g66270.2 68414.m07524 beta-glucosidase (PSR3.2) nearly identical
           to GI:2286069 from (Arabidopsis thaliana) (Plant Mol.
           Biol. 34 (1), 57-68 (1997)); similar to thioglucoside
           glucohydrolase (GI:984052) [Arabidopsis thaliana]
          Length = 522

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 393 IFKEXASFFINWSQFRVPWCIFSFCGFHSNRKSPCR 286
           +F E      NW  F  PW +F+  G+   +K+P R
Sbjct: 186 VFTEYGGKVKNWITFNEPW-VFAHAGYDLGKKAPGR 220


>At1g66270.1 68414.m07523 beta-glucosidase (PSR3.2) nearly identical
           to GI:2286069 from (Arabidopsis thaliana) (Plant Mol.
           Biol. 34 (1), 57-68 (1997)); similar to thioglucoside
           glucohydrolase (GI:984052) [Arabidopsis thaliana]
          Length = 524

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 393 IFKEXASFFINWSQFRVPWCIFSFCGFHSNRKSPCR 286
           +F E      NW  F  PW +F+  G+   +K+P R
Sbjct: 188 VFTEYGGKVKNWITFNEPW-VFAHAGYDLGKKAPGR 222


>At1g04050.1 68414.m00392 SET domain-containing protein / suppressor
           of variegation related 1 (SUVR1) identical to suppressor
           of variegation related 1 [Arabidopsis thaliana]
           GI:15004614; contains Pfam profiles PF00856: SET domain,
           PF05033: Pre-SET motif; identical to cDNA trithorax 3
           (ATX3) partial cds GI:15217142
          Length = 630

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = -2

Query: 362 IGPNSEFPGASSAFVASIQT---VKVLAGFLPASADLVGLHLDFLSD-KSGLRQSCYSAY 195
           IG +SE   A+++   +  T    K+   F PA+ +   LHL  + D +  + + C  +Y
Sbjct: 169 IGESSEHKVAAASVELASSTSGEAKICLSFAPATGETTNLHLPSMEDLRRAMEEKCLKSY 228


>At4g08910.1 68417.m01468 expressed protein 
          Length = 212

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +1

Query: 268 AEAG--KKPARTFTV*MEATKAEDAPGNSELGPIDEERRXFLEDALKSLTANI 420
           AE G  K+  + F    E  K  D   N  + P D +RR F ED+ K++  NI
Sbjct: 27  AEEGSRKRKVQEFLANDEIFKRSDESQNLIVSPFDHKRRRFNEDS-KNMNNNI 78


>At1g10130.1 68414.m01142 calcium-transporting ATPase 3, endoplasmic
           reticulum-type (ACA6) (ECA3) nearly identical to
           SP|Q9SY55 Calcium-transporting ATPase 3, endoplasmic
           reticulum-type (EC 3.6.3.8) {Arabidopsis thaliana);
           contains InterPro Accession IPR006069: Cation
           transporting ATPase
          Length = 998

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -3

Query: 412 LSDSLGHLQGXCVFLHQLVPIPSSLVHLQLLWL 314
           +S ++G +   C+F+  ++ IP +L  +QLLW+
Sbjct: 754 ISSNIGEV--VCIFVAAVLGIPDTLAPVQLLWV 784


>At4g34900.1 68417.m04949 xanthine dehydrogenase, putative similar
           to xanthine dehydrogenase from Gallus gallus, PIR:XOCHDH
           [SP|P47990], from Calliphora vicina [SP|P08793];
           contains Pfam profile PF02738 Aldehyde oxidase and
           xanthine dehydrogenase, molybdopterin binding domain
          Length = 1364

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 325 AEDAPGNSELGPIDEERRXFLEDAL 399
           A+D PGN+ +GPI  +   F  D +
Sbjct: 665 AKDVPGNNMIGPIVADEELFATDVV 689


>At1g45403.1 68414.m05196 membrane protein
          Length = 169

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = -3

Query: 400 LGHLQGXCVFLHQLVPIPSSLVHL----QLLWLPFKP*KSLQVSCLPRL 266
           +GH+ G  V LH L  I  SL        LLW+     ++L   CLP+L
Sbjct: 100 IGHIFGLSVLLHLLYSISPSLALWFGIPSLLWVFAAFIEALYALCLPQL 148


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,030,747
Number of Sequences: 28952
Number of extensions: 145257
Number of successful extensions: 329
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)