Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0294
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   2.4  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    21   7.3  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   9.7  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   9.7  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   9.7  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   9.7  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 401 SVNITMYRYKTLIDYFIRSNHCYINIPF 318
           SVN  M+ + +   +F +  HCY  I F
Sbjct: 404 SVNAGMWMWLSCSSFFQQFFHCYCPIKF 431


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 251 STGSHLIQNNVIALTIHAKILNKMGY*YNSDW 346
           ++GS  I  +V AL+ +  I+N M Y     W
Sbjct: 182 ASGSVDISYDVPALSKYLDIINVMAYDLRGSW 213


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 546  SIGIQNTFENGHV 584
            SI  ++ FENGHV
Sbjct: 1513 SIPAKDVFENGHV 1525


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 546  SIGIQNTFENGHV 584
            SI  ++ FENGHV
Sbjct: 1513 SIPAKDVFENGHV 1525


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 546  SIGIQNTFENGHV 584
            SI  ++ FENGHV
Sbjct: 1513 SIPAKDVFENGHV 1525


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 546  SIGIQNTFENGHV 584
            SI  ++ FENGHV
Sbjct: 1513 SIPAKDVFENGHV 1525


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,909
Number of Sequences: 336
Number of extensions: 3032
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)