Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0294
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.7  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   3.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   4.9  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   4.9  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = +2

Query: 461 LFRPSIISLLCYLRFRYEFDLYITLTLTF----YWNPEYVRKWSCKIEIE 598
           ++RP I+ L       YE  L    T+ +     W P  V K SC I++E
Sbjct: 110 IWRPDIV-LYNNADGNYEVTLMTKATVYYSGLVVWQPPAVYKSSCSIDVE 158


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
 Frame = +2

Query: 461 LFRPSIISLLCYLRFRYEFDLYITLTLTFY----WNPEYVRKWSCKIEIE 598
           ++RP I+ L       +E  L    TL +     W P  + K SC+I++E
Sbjct: 106 IWRPDIV-LYNNADGNFEVTLATKATLNYTGRVEWKPPAIYKSSCEIDVE 154


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 551 WNPEYVRKWSCKIEIE 598
           W P  + K SC+I++E
Sbjct: 143 WKPPAIYKSSCEIDVE 158


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
 Frame = +2

Query: 509 YEFDLYITLTLTFY----WNPEYVRKWSCKIEIE 598
           YE  L    TL +     W P  + K SC+I +E
Sbjct: 130 YEVTLMTKATLKYTGDVSWKPPAIYKSSCEINVE 163


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 401 SVNITMYRYKTLIDYFIRSNHCYINIPF 318
           SVN  M+ + +   +F +  HCY  + F
Sbjct: 408 SVNAGMWMWLSCSSFFQQFFHCYCPVRF 435


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 587 FYMTIFERILDSNRTSMLKLYIG 519
           F MTI E +  + +T ++ LY G
Sbjct: 258 FLMTIRESLPPTEKTPLISLYYG 280


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,971
Number of Sequences: 438
Number of extensions: 3597
Number of successful extensions: 23
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)