Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0290
         (717 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2DN33 Cluster: Putative uncharacterized protein; n=1; ...    33   5.3  
UniRef50_A2EAX8 Cluster: PAS domain S-box family protein; n=2; T...    33   9.3  

>UniRef50_A2DN33 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 440

 Score = 33.5 bits (73), Expect = 5.3
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = +2

Query: 215 VYLIINRYLIVMYLYHFYNSNNQSTIFSIVSMEHFFYVSIIKCCANPATSTRVTDPLR 388
           VY +    L  + + H+Y SNNQ  I  I+S  +   +SI+    N  T   +TD +R
Sbjct: 287 VYALDYPQLNAILVNHYYRSNNQEGILIIIS--YLIQLSIVPYLINYITRKEITDRIR 342


>UniRef50_A2EAX8 Cluster: PAS domain S-box family protein; n=2;
           Trichomonas vaginalis G3|Rep: PAS domain S-box family
           protein - Trichomonas vaginalis G3
          Length = 1347

 Score = 32.7 bits (71), Expect = 9.3
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 212 FVYLIINRYLIVMYLYHFYNSNNQSTIFSIVSMEHFFYVSII 337
           F ++I N Y  +  L+H+  +   S  +S     HFFYV+++
Sbjct: 111 FSFIIYNIYTFIGALFHYSITKRDSPCYSFWKHLHFFYVNLV 152


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 495,686,955
Number of Sequences: 1657284
Number of extensions: 8156413
Number of successful extensions: 17146
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17134
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57851245060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)