Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0290
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    27   3.5  
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg...    26   4.7  
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.2  

>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 209 EFVYLIINRYLIVMYLYHFYNSNNQSTIFSIVS 307
           +F + I++  +I MYL   +N N  +T F ++S
Sbjct: 618 QFYFCILSSAIIKMYLDFEFNENFNATTFGLLS 650


>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
           diacylglycerol ethanolaminesphotranferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 386

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/60 (23%), Positives = 28/60 (46%)
 Frame = +2

Query: 218 YLIINRYLIVMYLYHFYNSNNQSTIFSIVSMEHFFYVSIIKCCANPATSTRVTDPLRYTF 397
           +++IN   +++Y YH+      S +++  ++  F Y S      + A  T  + PL   F
Sbjct: 57  FVVINILTMLVYKYHYEMDAFPSWVYASWAIGLFLYQSFDAIDGSQARRTGTSSPLGQLF 116


>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +2

Query: 206 IEFVYLIINRYLIVMYLYHFYNSNNQSTIFSIVSMEHFFYV 328
           +EFV  I+   L V+ L   +NS +   +F +++++ FFYV
Sbjct: 198 VEFVLTILVLPLTVLILTLSFNSVSSENMFLMMTVQ-FFYV 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,208,046
Number of Sequences: 5004
Number of extensions: 39091
Number of successful extensions: 77
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)