Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0290
         (717 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M20705-1|AAA70215.1|  112|Drosophila melanogaster unknown protei...    35   0.13 
AE014298-886|AAF46162.1|  833|Drosophila melanogaster CG3869-PA,...    30   2.7  

>M20705-1|AAA70215.1|  112|Drosophila melanogaster unknown protein
           protein.
          Length = 112

 Score = 34.7 bits (76), Expect = 0.13
 Identities = 12/38 (31%), Positives = 25/38 (65%)
 Frame = +2

Query: 158 QQHKIYLKLHGIICM*IEFVYLIINRYLIVMYLYHFYN 271
           +QH+ YL+LH ++   I  + +++ R+L+++ LY   N
Sbjct: 21  RQHRNYLRLHLLVLSFIVLIAIVVARFLLILLLYRLQN 58


>AE014298-886|AAF46162.1|  833|Drosophila melanogaster CG3869-PA,
           isoform A protein.
          Length = 833

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
 Frame = +2

Query: 275 NNQSTI----FSIVSMEHFFYVSIIKCCANPATSTRVTDPLRYT 394
           N QS+I    +SIV + H +Y+S I+  +  + ST  T P+  T
Sbjct: 615 NRQSSIGVSFYSIVVLHHLYYISAIESRSQHSVSTPTTTPVEAT 658


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,762,994
Number of Sequences: 53049
Number of extensions: 352189
Number of successful extensions: 569
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3190721655
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)