Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0290
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81551-1|CAB04483.2|  335|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U50300-7|AAC48106.1|  645|Caenorhabditis elegans Hypothetical pr...    30   1.9  

>Z81551-1|CAB04483.2|  335|Caenorhabditis elegans Hypothetical
           protein F56A12.1 protein.
          Length = 335

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 239 LIVMYLYHFYNSNNQSTIFSIVSMEHF 319
           +IV Y Y  Y+SN   T+F ++S  HF
Sbjct: 142 IIVAYTYALYHSNEFETLFHLLSNRHF 168


>U50300-7|AAC48106.1|  645|Caenorhabditis elegans Hypothetical
           protein R03H4.5 protein.
          Length = 645

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +2

Query: 167 KIYLKLHGIICM*IEFVYLIINRYLIVMYLYH-FYNSNNQSTIFSIVSMEHFFYVSI 334
           K YLKL       + F+++  N YL     YH F+  N  S I  I++  H  Y  +
Sbjct: 335 KQYLKLEMRAVFPLVFLFIAANAYLQYSVRYHTFWKYNYTSEIQEIINQNHKSYAPL 391


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,866,529
Number of Sequences: 27780
Number of extensions: 209082
Number of successful extensions: 466
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)