Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0286
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    27   3.7  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   8.5  
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp...    25   8.5  

>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = -3

Query: 709 LNAPIIKFWMHFKNN*QTSNSNLIQML*LVLLQTRLVESTQRYAAAW 569
           LN P++ FW+  K   +  NS L+  + ++L+   ++ S   + + W
Sbjct: 524 LNGPLVPFWLWAKEY-ELFNSWLMPSVFMILVLPEIIFSVTSFFSLW 569


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/44 (22%), Positives = 28/44 (63%)
 Frame = -3

Query: 229  VFPPSCMCENEIYLYYIINVSLF*DYIKYLVINAIPIIKHLSQL 98
            ++P     ++E+  Y +++V+L  DYIK++ + +  ++ + +Q+
Sbjct: 1889 IYPLISYDQDELKHYMVVDVNLGEDYIKHITLRSPLLLINETQM 1932


>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
           beta subunit Qcr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 457

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 678 ISKIIDRHQTQI*FKCCDLSFFKRGLWRVLNGTQRLG 568
           +S I+ +HQ    F     S+   GLW +   T+ LG
Sbjct: 305 LSTIVQQHQLANSFMSFSTSYSDTGLWGIYLVTENLG 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,855,124
Number of Sequences: 5004
Number of extensions: 56463
Number of successful extensions: 116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)