Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0286
         (738 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0248 + 15819264-15819460,15820691-15820729,15820797-158209...    29   3.9  

>03_03_0248 +
           15819264-15819460,15820691-15820729,15820797-15820936,
           15821150-15821225,15822866-15823160,15823236-15823342,
           15823442-15823489,15823568-15823853,15823954-15823961,
           15824083-15824184,15824426-15824553,15824664-15824741,
           15825047-15825145,15825247-15825302
          Length = 552

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 20/52 (38%), Positives = 24/52 (46%)
 Frame = +1

Query: 490 VGRRAYGPPNGEWLPSPMDFSNARGRAKPLRTVEYSPQASFEEGQVTAFELN 645
           VGR +Y  P  E   SP   S +RGR    R+   SP  S   G+ T  E N
Sbjct: 275 VGRVSYRDPYREQRRSPSYDSYSRGRRSRSRSRSRSPSYSRRHGRGTHAESN 326


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,524,711
Number of Sequences: 37544
Number of extensions: 341292
Number of successful extensions: 737
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)