Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0286
         (738 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38717| Best HMM Match : Cornifin (HMM E-Value=7.2)                  29   3.9  
SB_35845| Best HMM Match : ShTK (HMM E-Value=7.9e-14)                  29   5.2  

>SB_38717| Best HMM Match : Cornifin (HMM E-Value=7.2)
          Length = 318

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = -2

Query: 578 SGLALPLALLKSMGDGNHSPLGGPYARLPT 489
           SG+  PLA   S  D  H P+GGP A  PT
Sbjct: 33  SGIFSPLASSTSASDSRHRPVGGP-AYSPT 61


>SB_35845| Best HMM Match : ShTK (HMM E-Value=7.9e-14)
          Length = 330

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +1

Query: 478 FIALVGRRAYGPPNGEWL-PSPMDFSNARGRAKPLRTVEYSPQASFEEG 621
           F+ +  R+   P   +WL P  +DFS+ RG + P    E       +EG
Sbjct: 28  FLHMPPRKKLHPLGSQWLNPHQLDFSDLRGVSPPTNESEAEVSPGDDEG 76


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,803,490
Number of Sequences: 59808
Number of extensions: 411594
Number of successful extensions: 1125
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)