Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0286
         (738 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC033687-1|AAH33687.1|  304|Homo sapiens mitochondrial methionyl...    30   10.0 
BC016630-1|AAH16630.2|  304|Homo sapiens mitochondrial methionyl...    30   10.0 
AK055688-1|BAB70984.1|  304|Homo sapiens protein ( Homo sapiens ...    30   10.0 

>BC033687-1|AAH33687.1|  304|Homo sapiens mitochondrial
           methionyl-tRNA formyltransferase protein.
          Length = 304

 Score = 29.9 bits (64), Expect = 10.0
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +2

Query: 506 TAHLMVSGYRRPWTSAMPGAEPSRCVPLSTLHKPRLKKDK 625
           TA    +GY  PW      A+PS+C    TL  P  KK K
Sbjct: 256 TATDFYNGYLHPWYQKNSQAQPSQC-RFQTLRLPTKKKQK 294


>BC016630-1|AAH16630.2|  304|Homo sapiens mitochondrial
           methionyl-tRNA formyltransferase protein.
          Length = 304

 Score = 29.9 bits (64), Expect = 10.0
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +2

Query: 506 TAHLMVSGYRRPWTSAMPGAEPSRCVPLSTLHKPRLKKDK 625
           TA    +GY  PW      A+PS+C    TL  P  KK K
Sbjct: 256 TATDFYNGYLHPWYQKNSQAQPSQC-RFQTLRLPTKKKQK 294


>AK055688-1|BAB70984.1|  304|Homo sapiens protein ( Homo sapiens
           cDNA FLJ31126 fis, clone IMR322000838, highly similar to
           METHIONYL-TRNA FORMYLTRANSFERASE, MITOCHONDRIAL
           PRECURSOR (EC ).
          Length = 304

 Score = 29.9 bits (64), Expect = 10.0
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +2

Query: 506 TAHLMVSGYRRPWTSAMPGAEPSRCVPLSTLHKPRLKKDK 625
           TA    +GY  PW      A+PS+C    TL  P  KK K
Sbjct: 256 TATDFYNGYLHPWYQKNSQAQPSQC-RFQTLRLPTKKKQK 294


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,634,049
Number of Sequences: 237096
Number of extensions: 1953002
Number of successful extensions: 3847
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3841
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8791154398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)