Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0286
         (738 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli...    29   4.3  
At3g12280.1 68416.m01533 retinoblastoma-related protein (RBR1) n...    27   9.8  

>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein
           helicase, putative 
          Length = 2172

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +1

Query: 481 IALVGRRAYGPPNGEWLP-SPMDFSNARGRA 570
           + + G + Y P  GEW+  SP+D     GRA
Sbjct: 851 VIIKGTQVYNPERGEWMELSPLDVMQMIGRA 881


>At3g12280.1 68416.m01533 retinoblastoma-related protein (RBR1) nearly
            identical to retinoblastoma-related protein [Arabidopsis
            thaliana] GI:8777927; contains Pfam profiles: PF01858
            retinoblastoma-associated protein A domain, PF01857
            retinoblastoma-associated protein B domain
          Length = 1013

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
 Frame = +1

Query: 406  SLLRDMLVNSLVMLSTKSYYYYYFFIALVGR--RAYGPPNGEWLPSPMDFSNARGRAKPL 579
            S LR   +++L+  STKSYY      A VG    AY  P+ +        +N+    K  
Sbjct: 911  SPLRGSKMDALISHSTKSYY------ACVGESTHAYQSPSKDLSAINNRLNNSSSNRK-- 962

Query: 580  RTVEYSPQASFEEGQVTAFELNLSLMSVN 666
            RT+ +  +A      + A  LNL   + N
Sbjct: 963  RTLNFDAEAGMVSDSMVANSLNLQNQNQN 991


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,400,543
Number of Sequences: 28952
Number of extensions: 282342
Number of successful extensions: 654
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)