Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0285
(694 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 111 3e-25
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 109 2e-24
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 98 4e-21
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein... 81 7e-16
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein... 81 9e-16
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 66 3e-11
At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein... 62 4e-10
At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein... 54 9e-08
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 51 8e-07
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 51 8e-07
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 51 8e-07
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 51 8e-07
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 51 8e-07
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein... 50 2e-06
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 48 4e-06
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 48 4e-06
At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein... 40 0.002
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 39 0.004
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 39 0.004
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 38 0.005
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.005
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.005
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 38 0.006
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ... 37 0.011
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 36 0.034
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein... 35 0.045
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 35 0.045
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 35 0.059
At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein... 33 0.14
At4g19130.1 68417.m02823 replication protein-related similar to ... 33 0.18
At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein... 33 0.18
At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)... 33 0.18
At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar ... 33 0.24
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 32 0.31
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ... 32 0.41
At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein... 31 0.55
At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PS... 31 0.55
At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein... 31 0.55
At4g34710.2 68417.m04927 arginine decarboxylase 2 (SPE2) identic... 31 0.73
At4g34710.1 68417.m04926 arginine decarboxylase 2 (SPE2) identic... 31 0.73
At3g31950.1 68416.m04046 hypothetical protein 31 0.73
At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak sim... 31 0.73
At5g08730.1 68418.m01037 IBR domain-containing protein contains ... 31 0.96
At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kina... 31 0.96
At5g51300.2 68418.m06360 splicing factor-related contains simila... 30 1.3
At5g51300.1 68418.m06359 splicing factor-related contains simila... 30 1.3
At5g47430.1 68418.m05844 expressed protein 30 1.3
At5g47390.1 68418.m05840 myb family transcription factor contain... 30 1.3
At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein... 30 1.3
At4g39960.1 68417.m05660 DNAJ heat shock family protein similar ... 30 1.3
At4g17410.1 68417.m02607 expressed protein 30 1.3
At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein... 30 1.3
At3g45480.1 68416.m04911 zinc finger (C3HC4-type RING finger) fa... 30 1.3
At3g16350.1 68416.m02068 myb family transcription factor ; conta... 30 1.3
At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PS... 30 1.3
At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PS... 30 1.3
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 30 1.7
At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative s... 29 2.2
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 29 2.2
At2g16690.1 68415.m01915 hypothetical protein similar to zinc fi... 29 2.2
At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains... 29 2.2
At1g10450.1 68414.m01176 paired amphipathic helix repeat-contain... 29 2.2
At5g61670.2 68418.m07738 expressed protein 29 2.9
At5g61670.1 68418.m07737 expressed protein 29 2.9
At2g41570.1 68415.m05137 hypothetical protein similar to zinc fi... 29 2.9
At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein... 29 2.9
At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical ... 29 3.9
At5g21140.1 68418.m02524 expressed protein 29 3.9
At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar ... 29 3.9
At5g06130.1 68418.m00681 chaperone protein dnaJ-related similar ... 29 3.9
At4g06479.1 68417.m00885 hypothetical protein 29 3.9
At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein... 29 3.9
At2g38560.1 68415.m04737 transcription factor S-II (TFIIS) domai... 29 3.9
At2g31850.1 68415.m03889 expressed protein 29 3.9
At2g07740.1 68415.m01002 zinc knuckle (CCHC-type) family protein... 29 3.9
At4g30200.3 68417.m04295 expressed protein contains weak similar... 28 5.1
At4g30200.2 68417.m04294 expressed protein contains weak similar... 28 5.1
At4g30200.1 68417.m04293 expressed protein contains weak similar... 28 5.1
At3g07650.2 68416.m00917 zinc finger (B-box type) family protein... 28 5.1
At3g07650.1 68416.m00916 zinc finger (B-box type) family protein... 28 5.1
At5g27220.1 68418.m03247 protein transport protein-related low s... 28 6.8
At4g06526.1 68417.m00938 hypothetical protein 28 6.8
At2g22360.1 68415.m02653 DNAJ heat shock family protein similar ... 28 6.8
At1g40080.1 68414.m04737 hypothetical protein member of hypothet... 28 6.8
At5g48250.1 68418.m05961 zinc finger (B-box type) family protein... 27 8.9
At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein... 27 8.9
At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR... 27 8.9
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 111 bits (268), Expect = 3e-25
Identities = 57/164 (34%), Positives = 75/164 (45%), Gaps = 31/164 (18%)
Frame = +2
Query: 140 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEA---------- 289
CY C TGHFAR+CT G + + C+ C GH ARDC +++
Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAV 193
Query: 290 ----DRCYRCNGTGHIARECAQ----------SPDEPSCYNCNKTGHIARNCPEGGRESA 427
D CY C GH AR+C Q +CY+C GHIAR+C +
Sbjct: 194 KGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDC--ATKRQP 251
Query: 428 TQTCYNCNKSGHISRNCPD-------GTKTCYVCGKPGHISREC 538
++ CY C SGH++R+C CY CGK GH +REC
Sbjct: 252 SRGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGHFAREC 295
Score = 109 bits (261), Expect = 2e-24
Identities = 60/171 (35%), Positives = 79/171 (46%), Gaps = 34/171 (19%)
Frame = +2
Query: 134 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC------------ 277
S CY C GH +++C GG +R E C+ C TGHFARDC
Sbjct: 100 SGCYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGAT 159
Query: 278 KEEADRCYRCNGTGHIARECAQSP------------DEPSCYNCNKTGHIARNCPE---- 409
K D CY C GH+AR+C Q CY C GH AR+C +
Sbjct: 160 KGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAA 219
Query: 410 GGRES---ATQTCYNCNKSGHISRNCP---DGTKTCYVCGKPGHISRECDE 544
G S + TCY+C GHI+R+C ++ CY CG GH++R+CD+
Sbjct: 220 GNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCGGSGHLARDCDQ 270
Score = 58.8 bits (136), Expect = 3e-09
Identities = 35/97 (36%), Positives = 46/97 (47%), Gaps = 30/97 (30%)
Frame = +2
Query: 140 CYKCNRTGHFARECTQ--------------------GGV--VSRDSGFNRQREK-CFKCN 250
CY C GHFAR+CTQ GGV ++RD RQ + C++C
Sbjct: 200 CYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCG 259
Query: 251 RTGHFARDCKEEA-------DRCYRCNGTGHIARECA 340
+GH ARDC + + CY+C GH AREC+
Sbjct: 260 GSGHLARDCDQRGSGGGGNDNACYKCGKEGHFARECS 296
Score = 52.0 bits (119), Expect = 4e-07
Identities = 22/50 (44%), Positives = 28/50 (56%)
Frame = +2
Query: 140 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEA 289
CY+C +GH AR+C Q G SG C+KC + GHFAR+C A
Sbjct: 255 CYQCGGSGHLARDCDQRG-----SGGGGNDNACYKCGKEGHFARECSSVA 299
Score = 35.1 bits (77), Expect = 0.045
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 128 SSSVCYKCNRTGHFARECT 184
+ + CYKC + GHFAREC+
Sbjct: 278 NDNACYKCGKEGHFARECS 296
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 485 GTKTCYVCGKPGHISREC 538
G CY CG+ GHIS++C
Sbjct: 98 GGSGCYNCGELGHISKDC 115
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 109 bits (261), Expect = 2e-24
Identities = 59/168 (35%), Positives = 77/168 (45%), Gaps = 35/168 (20%)
Frame = +2
Query: 140 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK------------- 280
CY C GHFAR+C Q G + G R C+ C GH A+DC+
Sbjct: 132 CYMCGDVGHFARDCRQSGGGNSGGGGGGGR-PCYSCGEVGHLAKDCRGGSGGNRYGGGGG 190
Query: 281 --EEADRCYRCNGTGHIARECAQS------PDEPSCYNCNKTGHIARNC----PEGGRES 424
D CY C G GH AR+C Q+ +CY C GHIA+ C P GG
Sbjct: 191 RGSGGDGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGG-GG 249
Query: 425 ATQTCYNCNKSGHISRNCP----------DGTKTCYVCGKPGHISREC 538
+ CY C +GH++R+C G+ C++CGK GH +REC
Sbjct: 250 GGRACYECGGTGHLARDCDRRGSGSSGGGGGSNKCFICGKEGHFAREC 297
Score = 94.7 bits (225), Expect = 5e-20
Identities = 55/177 (31%), Positives = 76/177 (42%), Gaps = 39/177 (22%)
Frame = +2
Query: 128 SSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQ---REKCFKCNRTGHFARDCKEEAD- 292
S C+ C GH A++C G G S G R+ +C+ C GHFARDC++
Sbjct: 92 SGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFARDCRQSGGG 151
Query: 293 ----------RCYRCNGTGHIAREC-------------AQSPDEPSCYNCNKTGHIARNC 403
CY C GH+A++C + CY C GH AR+C
Sbjct: 152 NSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDC 211
Query: 404 PEGGRES---ATQTCYNCNKSGHISRNCPD--------GTKTCYVCGKPGHISRECD 541
+ G + TCY C GHI++ C G + CY CG GH++R+CD
Sbjct: 212 RQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGGGGGGRACYECGGTGHLARDCD 268
Score = 75.4 bits (177), Expect = 3e-14
Identities = 52/156 (33%), Positives = 64/156 (41%), Gaps = 43/156 (27%)
Frame = +2
Query: 200 SRDSGFNRQREKCFKCNRTGHFARDCKEEA----------------DRCYRCNGTGHIAR 331
SR SG N CF C GH A+DC + CY C GH AR
Sbjct: 89 SRGSGGN-----CFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFAR 143
Query: 332 ECAQSPDEPS---------CYNCNKTGHIARNC----------PEGGRESATQTCYNCNK 454
+C QS S CY+C + GH+A++C GGR S CY C
Sbjct: 144 DCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGG 203
Query: 455 SGHISRNCPD--------GTKTCYVCGKPGHISREC 538
GH +R+C G TCY CG GHI++ C
Sbjct: 204 VGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVC 239
Score = 55.6 bits (128), Expect = 3e-08
Identities = 29/78 (37%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Frame = +2
Query: 134 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEE--------- 286
S CY C GH A+ CT + S G R C++C TGH ARDC
Sbjct: 224 STCYTCGGVGHIAKVCTSK-IPSGGGGGGRA---CYECGGTGHLARDCDRRGSGSSGGGG 279
Query: 287 -ADRCYRCNGTGHIAREC 337
+++C+ C GH AREC
Sbjct: 280 GSNKCFICGKEGHFAREC 297
Score = 54.8 bits (126), Expect = 5e-08
Identities = 24/50 (48%), Positives = 29/50 (58%)
Frame = +2
Query: 140 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEA 289
CY+C TGH AR+C + G S SG KCF C + GHFAR+C A
Sbjct: 254 CYECGGTGHLARDCDRRG--SGSSGGGGGSNKCFICGKEGHFARECTSVA 301
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/63 (31%), Positives = 34/63 (53%)
Frame = +2
Query: 359 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 538
+C+NC + GH+A++C +GG + +SG G CY+CG GH +R+C
Sbjct: 95 NCFNCGEVGHMAKDC-DGGSGGKSFGGGGGRRSG--------GEGECYMCGDVGHFARDC 145
Query: 539 DEA 547
++
Sbjct: 146 RQS 148
Score = 32.3 bits (70), Expect = 0.31
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 131 SSVCYKCNRTGHFARECT 184
S+ C+ C + GHFARECT
Sbjct: 281 SNKCFICGKEGHFARECT 298
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 98.3 bits (234), Expect = 4e-21
Identities = 49/136 (36%), Positives = 70/136 (51%), Gaps = 1/136 (0%)
Frame = +2
Query: 134 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNG 313
++C C R GHFAR+C+ V C C GH A +C E+ RC+ C
Sbjct: 55 NLCNNCKRPGHFARDCSNVSV-------------CNNCGLPGHIAAECTAES-RCWNCRE 100
Query: 314 TGHIARECAQSPDEPSCYNCNKTGHIARNCPEG-GRESATQTCYNCNKSGHISRNCPDGT 490
GH+A C+ +E C++C K+GH AR+C R + C NC K GH++ +C +
Sbjct: 101 PGHVASNCS---NEGICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADCTN-D 156
Query: 491 KTCYVCGKPGHISREC 538
K C C GHI+R+C
Sbjct: 157 KACKNCRTSGHIARDC 172
Score = 85.4 bits (202), Expect = 3e-17
Identities = 43/111 (38%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Frame = +2
Query: 224 QREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 403
Q C C R GHFARDC C C GHIA EC E C+NC + GH+A NC
Sbjct: 53 QGNLCNNCKRPGHFARDCSN-VSVCNNCGLPGHIAAECTA---ESRCWNCREPGHVASNC 108
Query: 404 PEGGRESATQTCYNCNKSGHISRNCPDG------TKTCYVCGKPGHISREC 538
G C++C KSGH +R+C + + C C K GH++ +C
Sbjct: 109 SNEG------ICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADC 153
Score = 82.6 bits (195), Expect = 2e-16
Identities = 51/149 (34%), Positives = 76/149 (51%), Gaps = 8/149 (5%)
Frame = +2
Query: 128 SSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRC 307
+ +C+ C ++GH AR+C+ SR +G R CFK GH A DC + C C
Sbjct: 110 NEGICHSCGKSGHRARDCSNSD--SR-AGDLRLCNNCFK---QGHLAADCTND-KACKNC 162
Query: 308 NGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG---RESATQTCYNCNKSGHISRNC 478
+GHIAR+C ++P C C+ +GH+AR+CP+G + ++ + G +SR
Sbjct: 163 RTSGHIARDCR---NDPVCNICSISGHVARHCPKGDSNYSDRGSRVRDGGMQRGGLSRMS 219
Query: 479 PD--GTKT---CYVCGKPGHISRECDEAR 550
D G C+ CG GH + EC AR
Sbjct: 220 RDREGVSAMIICHNCGGRGHRAYECPSAR 248
Score = 79.0 bits (186), Expect = 3e-15
Identities = 47/130 (36%), Positives = 61/130 (46%), Gaps = 12/130 (9%)
Frame = +2
Query: 134 SVCYKCNRTGHFARECTQGGVV--SRDSGF---NRQREK-CFKCNRTGHFARDCKEEADR 295
SVC C GH A ECT R+ G N E C C ++GH ARDC R
Sbjct: 74 SVCNNCGLPGHIAAECTAESRCWNCREPGHVASNCSNEGICHSCGKSGHRARDCSNSDSR 133
Query: 296 ------CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 457
C C GH+A +C ++ +C NC +GHIAR+C C C+ S
Sbjct: 134 AGDLRLCNNCFKQGHLAADCT---NDKACKNCRTSGHIARDCRN------DPVCNICSIS 184
Query: 458 GHISRNCPDG 487
GH++R+CP G
Sbjct: 185 GHVARHCPKG 194
>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 268
Score = 81.0 bits (191), Expect = 7e-16
Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 18/126 (14%)
Frame = +2
Query: 230 EKCFKCNRTGHFARDCKEEADR-----CYRCNGTGHIARECAQSPDEPS----CYNCNKT 382
E CF C+ H A+ C E+++ C +C GH + C + +E S CYNC T
Sbjct: 74 EGCFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDT 133
Query: 383 GHIARNCPEGGRESATQ--TCYNCNKSGHISRNCPDGTK-------TCYVCGKPGHISRE 535
GH +CP + T+ +C+ C GHIS+NCP+ C VCG H+ ++
Sbjct: 134 GHSLSHCPYPMEDGGTKFASCFICKGQGHISKNCPENKHGIYPMGGCCKVCGSVAHLVKD 193
Query: 536 CDEARN 553
C + N
Sbjct: 194 CPDKFN 199
Score = 58.0 bits (134), Expect = 6e-09
Identities = 35/119 (29%), Positives = 49/119 (41%), Gaps = 7/119 (5%)
Frame = +2
Query: 203 RDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRC-NGTGHIARECAQSPDEPSCYNCNK 379
+D ++++ FK + G DR R + T H R P E C+ C+
Sbjct: 30 KDPNKKKKKKSLFKKKKPG-------SSTDRPQRTGSSTRHPLRVPGMKPGE-GCFICHS 81
Query: 380 TGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGT------KTCYVCGKPGHISREC 538
HIA+ CPE + C C + GH +NCP+ K CY CG GH C
Sbjct: 82 KTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDTGHSLSHC 140
Score = 54.4 bits (125), Expect = 7e-08
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 12/113 (10%)
Frame = +2
Query: 131 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD------ 292
+ +C +C R GH + C + + + +++ C+ C TGH C +
Sbjct: 98 NKICLQCRRRGHSLKNCPE------KNNESSEKKLCYNCGDTGHSLSHCPYPMEDGGTKF 151
Query: 293 -RCYRCNGTGHIARECAQS-----PDEPSCYNCNKTGHIARNCPEGGRESATQ 433
C+ C G GHI++ C ++ P C C H+ ++CP+ + + Q
Sbjct: 152 ASCFICKGQGHISKNCPENKHGIYPMGGCCKVCGSVAHLVKDCPDKFNQESAQ 204
Score = 35.5 bits (78), Expect = 0.034
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Frame = +2
Query: 437 CYNCNKSGHISRNCPDGT-----KTCYVCGKPGHISRECDEARN*PQPPCLPYN 583
C+ C+ HI++ CP+ + K C C + GH + C E N L YN
Sbjct: 76 CFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYN 129
>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 372
Score = 80.6 bits (190), Expect = 9e-16
Identities = 47/145 (32%), Positives = 69/145 (47%), Gaps = 14/145 (9%)
Frame = +2
Query: 122 AMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQRE---KCFKCNRTGHFARDCKEEAD 292
A + + CYKC + GH+AR+CT V D+G + CFKC + GH++RDC ++
Sbjct: 233 AKTGTPCYKCGKEGHWARDCT----VQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQS- 287
Query: 293 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP--------EGGR---ESATQTC 439
+ + S CY C K GH +R+C + G+ S+T C
Sbjct: 288 -----GNPKYEPGQMKSSSSSGECYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDC 342
Query: 440 YNCNKSGHISRNCPDGTKTCYVCGK 514
Y C K+GH SR+C +T GK
Sbjct: 343 YKCGKAGHWSRDCTSPAQTTNTPGK 367
Score = 48.0 bits (109), Expect = 6e-06
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 12/73 (16%)
Frame = +2
Query: 356 PSCYNCNKTGHIARNCPEGGRESATQT-CYNCNKSGHISRNCPDGTKT-----------C 499
P+ Y+ K + + G + + T T CY C K GH +R+C + T C
Sbjct: 211 PTSYSVTKNSNFGDSDTRGYQNAKTGTPCYKCGKEGHWARDCTVQSDTGPVKSTSAAGDC 270
Query: 500 YVCGKPGHISREC 538
+ CGKPGH SR+C
Sbjct: 271 FKCGKPGHWSRDC 283
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 65.7 bits (153), Expect = 3e-11
Identities = 48/157 (30%), Positives = 61/157 (38%), Gaps = 10/157 (6%)
Frame = +2
Query: 98 AQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC 277
A+ F P A S CY C GH + C ++R+ CF C H A+ C
Sbjct: 155 ARYFDPPDAGWVS-CYSCGEQGHTSFNCPTP---------TKRRKPCFICGSLEHGAKQC 204
Query: 278 KEEADRCYRCNGTGHIARECAQSPDEPS----CYNCNKTGHIARNCP-EGGRESATQT-C 439
+ D CY C TGH A++C S C C GH C E +E C
Sbjct: 205 SKGHD-CYICKKTGHRAKDCPDKYKNGSKGAVCLRCGDFGHDMILCKYEYSKEDLKDVQC 263
Query: 440 YNCNKSGHI----SRNCPDGTKTCYVCGKPGHISREC 538
Y C GH+ N +CY CG+ GH C
Sbjct: 264 YICKSFGHLCCVEPGNSLSWAVSCYRCGQLGHSGLAC 300
Score = 64.5 bits (150), Expect = 6e-11
Identities = 41/142 (28%), Positives = 56/142 (39%), Gaps = 7/142 (4%)
Frame = +2
Query: 89 VLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFA 268
+L E+SK + CY C GH C + G C++C + GH
Sbjct: 247 ILCKYEYSKE-DLKDVQCYICKSFGHLC--CVEPG------NSLSWAVSCYRCGQLGHSG 297
Query: 269 RDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEG-------GRESA 427
C + + S + CY C + GH AR CP GRES
Sbjct: 298 LACGRHYEESNENDSA--TPERLFNSREASECYRCGEEGHFARECPNSSSISTSHGRESQ 355
Query: 428 TQTCYNCNKSGHISRNCPDGTK 493
T CY CN SGH +R CP+ ++
Sbjct: 356 T-LCYRCNGSGHFARECPNSSQ 376
Score = 62.9 bits (146), Expect = 2e-10
Identities = 49/171 (28%), Positives = 64/171 (37%), Gaps = 38/171 (22%)
Frame = +2
Query: 140 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADR-------C 298
CY C +TGH A++C +G + C +C GH CK E + C
Sbjct: 210 CYICKKTGHRAKDCPD----KYKNG--SKGAVCLRCGDFGHDMILCKYEYSKEDLKDVQC 263
Query: 299 YRCNGTGHIARECAQSPDEP-----SCYNCNKTGHIARNC-----PEGGRESAT------ 430
Y C GH+ C P SCY C + GH C +SAT
Sbjct: 264 YICKSFGHL---CCVEPGNSLSWAVSCYRCGQLGHSGLACGRHYEESNENDSATPERLFN 320
Query: 431 ----QTCYNCNKSGHISRNCPDGTKT-----------CYVCGKPGHISREC 538
CY C + GH +R CP+ + CY C GH +REC
Sbjct: 321 SREASECYRCGEEGHFARECPNSSSISTSHGRESQTLCYRCNGSGHFAREC 371
Score = 58.8 bits (136), Expect = 3e-09
Identities = 26/77 (33%), Positives = 38/77 (49%)
Frame = +2
Query: 131 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCN 310
+S CY+C GHFAREC +S G + C++CN +GHFAR+C + R
Sbjct: 324 ASECYRCGEEGHFARECPNSSSISTSHG-RESQTLCYRCNGSGHFARECPNSSQVSKRDR 382
Query: 311 GTGHIARECAQSPDEPS 361
T + + + E S
Sbjct: 383 ETSTTSHKSRKKNKENS 399
Score = 54.0 bits (124), Expect = 9e-08
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +2
Query: 359 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 538
SCY+C + GH + NCP + + C+ C H ++ C G CY+C K GH +++C
Sbjct: 167 SCYSCGEQGHTSFNCPTPTKR--RKPCFICGSLEHGAKQCSKG-HDCYICKKTGHRAKDC 223
Query: 539 -DEARN 553
D+ +N
Sbjct: 224 PDKYKN 229
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 128 SSSVCYKCNRTGHFARECTQGGVVS-RDSGFNRQREKCFKCNR 253
S ++CY+CN +GHFAREC VS RD + K K N+
Sbjct: 354 SQTLCYRCNGSGHFARECPNSSQVSKRDRETSTTSHKSRKKNK 396
>At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 254
Score = 61.7 bits (143), Expect = 4e-10
Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Frame = +2
Query: 281 EEADRCYRCNGTGHIARECAQSPDEPS-----CYNCNKTGHIARNCPEGGR-ESATQTCY 442
+EA+ C RC G GH C CY CN GH+ C E G +S T +CY
Sbjct: 23 DEAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHLC--CIEPGHTQSWTVSCY 80
Query: 443 NCNKSGHISRNC-----PDGTKTCYVCGKPGHISREC 538
C + GH C + +C++CG+ GH +C
Sbjct: 81 RCGQLGHTGLACGRHYDDSVSPSCFICGREGHFEHQC 117
Score = 58.8 bits (136), Expect = 3e-09
Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 12/105 (11%)
Frame = +2
Query: 224 QREKCFKCNRTGHFARDCKEEAD-------RCYRCNGTGHIARECAQSPDEP-----SCY 367
+ E C +C GH CK E +CY CN GH+ C P SCY
Sbjct: 24 EAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHL---CCIEPGHTQSWTVSCY 80
Query: 368 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCY 502
C + GH C +S + +C+ C + GH C + C+
Sbjct: 81 RCGQLGHTGLACGRHYDDSVSPSCFICGREGHFEHQCHNSFSVCF 125
Score = 50.8 bits (116), Expect = 8e-07
Identities = 40/143 (27%), Positives = 53/143 (37%), Gaps = 10/143 (6%)
Frame = +2
Query: 140 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 319
CY+C + GH C G DS CF C R GHF C C+ + +
Sbjct: 79 CYRCGQLGHTGLAC---GRHYDDS----VSPSCFICGREGHFEHQCHNSFSVCFPEDSSE 131
Query: 320 HIARECAQSPDEPSCYNCNKT-----GHIARNCPEGGRE-----SATQTCYNCNKSGHIS 469
EC Q PD S T GH CP+ S + + N S +
Sbjct: 132 D---EC-QGPDSSSVRFQENTREEEEGHFEHQCPDSSSVCFQEISREEGFISLNSSSKST 187
Query: 470 RNCPDGTKTCYVCGKPGHISREC 538
+ + CY C GHI+R+C
Sbjct: 188 SKGRETRRLCYECKGKGHIARDC 210
Score = 42.7 bits (96), Expect = 2e-04
Identities = 32/131 (24%), Positives = 44/131 (33%), Gaps = 10/131 (7%)
Frame = +2
Query: 140 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD-----RCYR 304
CY CN GH C + G C++C + GH C D C+
Sbjct: 55 CYVCNSLGHLC--CIEPGHT------QSWTVSCYRCGQLGHTGLACGRHYDDSVSPSCFI 106
Query: 305 CNGTGHIARECAQS-----PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHIS 469
C GH +C S P++ S C + E RE + GH
Sbjct: 107 CGREGHFEHQCHNSFSVCFPEDSSEDECQGPDSSSVRFQENTRE---------EEEGHFE 157
Query: 470 RNCPDGTKTCY 502
CPD + C+
Sbjct: 158 HQCPDSSSVCF 168
Score = 37.9 bits (84), Expect = 0.006
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Frame = +2
Query: 128 SSSVCYKCN----RTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADR 295
SSSV ++ N GHF +C V +R+ E N + +E
Sbjct: 139 SSSVRFQENTREEEEGHFEHQCPDSSSVCFQE-ISRE-EGFISLNSSSKSTSKGRETRRL 196
Query: 296 CYRCNGTGHIARECAQS 346
CY C G GHIAR+C S
Sbjct: 197 CYECKGKGHIARDCPNS 213
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 80 YISVLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVV 199
+IS+ S+ + + + +CY+C GH AR+C V
Sbjct: 177 FISLNSSSKSTSKGRETRRLCYECKGKGHIARDCPNSSQV 216
>At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 393
Score = 54.0 bits (124), Expect = 9e-08
Identities = 39/140 (27%), Positives = 56/140 (40%), Gaps = 12/140 (8%)
Frame = +2
Query: 155 RTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARE 334
+TG F++ ++ RD + QR K + AR E+ + + N R
Sbjct: 200 KTGLFSKRMK---IIHRDPVLHAQRVAAIKKAKGTPAARKHASESMKAFFSNPVNREQRS 256
Query: 335 CAQSPDEPSCYNCNKTGHIARNCPEGGRESATQ-TCYNCNKSGHISRNCP-------DGT 490
+ + C NC + GH CPE G + + C C GH R CP G
Sbjct: 257 LSMKGTKFYCKNCGQEGHRRHYCPELGTNADRKFRCRGCGGKGHNRRTCPKSKSIVTKGI 316
Query: 491 KT----CYVCGKPGHISREC 538
T C +CG+ GH SR C
Sbjct: 317 STRYHKCGICGERGHNSRTC 336
Score = 40.7 bits (91), Expect = 9e-04
Identities = 35/125 (28%), Positives = 46/125 (36%), Gaps = 11/125 (8%)
Frame = +2
Query: 140 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD--------- 292
C C + GH C + G + D F +C C GH R C +
Sbjct: 266 CKNCGQEGHRRHYCPELGT-NADRKF-----RCRGCGGKGHNRRTCPKSKSIVTKGISTR 319
Query: 293 --RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHI 466
+C C GH +R C + P+ N + +G N E G T C C K GH
Sbjct: 320 YHKCGICGERGHNSRTCRK----PTGVNPSCSGE---NSGEDGVGKITYACGFCKKMGHN 372
Query: 467 SRNCP 481
R CP
Sbjct: 373 VRTCP 377
Score = 39.9 bits (89), Expect = 0.002
Identities = 39/124 (31%), Positives = 46/124 (37%), Gaps = 11/124 (8%)
Frame = +2
Query: 236 CFKCNRTGHFARDCKE---EADRCYRCNGTG---HIARECAQSPDEPSCYNCNKTGHIAR 397
C C + GH C E ADR +RC G G H R C +S + + H
Sbjct: 266 CKNCGQEGHRRHYCPELGTNADRKFRCRGCGGKGHNRRTCPKSKSIVT-KGISTRYHKCG 324
Query: 398 NCPEGGRESAT---QTCYNCNKSGHISRNCPDG--TKTCYVCGKPGHISRECDEARN*PQ 562
C E G S T T N + SG S G T C C K GH R C +
Sbjct: 325 ICGERGHNSRTCRKPTGVNPSCSGENSGEDGVGKITYACGFCKKMGHNVRTCPSKQVSDS 384
Query: 563 PPCL 574
CL
Sbjct: 385 DSCL 388
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 50.8 bits (116), Expect = 8e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 233 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 349
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 140
Score = 47.6 bits (108), Expect = 8e-06
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Frame = +2
Query: 380 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISR 532
T +R P G R++ ++ C+NC GH +R+C G CY CG+ GHI R
Sbjct: 75 TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 134
Query: 533 ECDEARN*PQP 565
C +N P P
Sbjct: 135 NC---KNSPSP 142
Score = 47.6 bits (108), Expect = 8e-06
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +2
Query: 293 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 403
RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 136
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +2
Query: 347 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 478
P C+NC GH AR+C G ++ CY C + GHI RNC
Sbjct: 96 PGSGRCFNCGVDGHWARDCTAGDWKN---KCYRCGERGHIERNC 136
Score = 41.5 bits (93), Expect = 5e-04
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +2
Query: 131 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 280
S C+ C GH+AR+CT G + KC++C GH R+CK
Sbjct: 98 SGRCFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCK 137
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 50.8 bits (116), Expect = 8e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 233 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 349
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 99
Score = 47.6 bits (108), Expect = 8e-06
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Frame = +2
Query: 380 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISR 532
T +R P G R++ ++ C+NC GH +R+C G CY CG+ GHI R
Sbjct: 34 TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 93
Query: 533 ECDEARN*PQP 565
C +N P P
Sbjct: 94 NC---KNSPSP 101
Score = 47.6 bits (108), Expect = 8e-06
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +2
Query: 293 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 403
RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 95
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +2
Query: 347 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 478
P C+NC GH AR+C G ++ CY C + GHI RNC
Sbjct: 55 PGSGRCFNCGVDGHWARDCTAGDWKN---KCYRCGERGHIERNC 95
Score = 41.5 bits (93), Expect = 5e-04
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +2
Query: 131 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 280
S C+ C GH+AR+CT G + KC++C GH R+CK
Sbjct: 57 SGRCFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCK 96
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 50.8 bits (116), Expect = 8e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 233 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 349
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 99
Score = 49.2 bits (112), Expect = 3e-06
Identities = 32/110 (29%), Positives = 49/110 (44%)
Frame = +2
Query: 347 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHI 526
P C+NC GH AR+C G ++ CY C + GHI RNC + K + G
Sbjct: 55 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPKK---LRRSGSY 108
Query: 527 SRECDEARN*PQPPCLPYNQLCIL*CHARTISKGRHARHTITDYSTDAER 676
SR +R+ P+ P L ++R+ S R ++ + S +R
Sbjct: 109 SRSPVRSRS-PRRRRSPSRSLSRSRSYSRSRSPVRRRERSVEERSRSPKR 157
Score = 49.2 bits (112), Expect = 3e-06
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +2
Query: 287 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 445
A RC+ C GH AR+C + CY C + GHI RNC ++ Y+
Sbjct: 57 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 109
Score = 44.8 bits (101), Expect = 6e-05
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Frame = +2
Query: 380 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCYVCGKPGHISR 532
T +R P G R+ ++ C+NC GH +R+C D CY CG+ GHI R
Sbjct: 34 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 93
Query: 533 EC 538
C
Sbjct: 94 NC 95
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +2
Query: 140 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYR 304
C+ C GH+AR+CT G + KC++C GH R+CK + R
Sbjct: 60 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 104
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 50.8 bits (116), Expect = 8e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 233 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 349
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 70 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 110
Score = 49.2 bits (112), Expect = 3e-06
Identities = 32/110 (29%), Positives = 49/110 (44%)
Frame = +2
Query: 347 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHI 526
P C+NC GH AR+C G ++ CY C + GHI RNC + K + G
Sbjct: 66 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPKK---LRRSGSY 119
Query: 527 SRECDEARN*PQPPCLPYNQLCIL*CHARTISKGRHARHTITDYSTDAER 676
SR +R+ P+ P L ++R+ S R ++ + S +R
Sbjct: 120 SRSPVRSRS-PRRRRSPSRSLSRSRSYSRSRSPVRRRERSVEERSRSPKR 168
Score = 49.2 bits (112), Expect = 3e-06
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +2
Query: 287 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 445
A RC+ C GH AR+C + CY C + GHI RNC ++ Y+
Sbjct: 68 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 120
Score = 44.8 bits (101), Expect = 6e-05
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Frame = +2
Query: 380 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCYVCGKPGHISR 532
T +R P G R+ ++ C+NC GH +R+C D CY CG+ GHI R
Sbjct: 45 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 104
Query: 533 EC 538
C
Sbjct: 105 NC 106
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +2
Query: 140 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYR 304
C+ C GH+AR+CT G + KC++C GH R+CK + R
Sbjct: 71 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 115
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 50.8 bits (116), Expect = 8e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 233 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 349
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 140
Score = 49.2 bits (112), Expect = 3e-06
Identities = 32/110 (29%), Positives = 49/110 (44%)
Frame = +2
Query: 347 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHI 526
P C+NC GH AR+C G ++ CY C + GHI RNC + K + G
Sbjct: 96 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPKK---LRRSGSY 149
Query: 527 SRECDEARN*PQPPCLPYNQLCIL*CHARTISKGRHARHTITDYSTDAER 676
SR +R+ P+ P L ++R+ S R ++ + S +R
Sbjct: 150 SRSPVRSRS-PRRRRSPSRSLSRSRSYSRSRSPVRRRERSVEERSRSPKR 198
Score = 49.2 bits (112), Expect = 3e-06
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +2
Query: 287 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 445
A RC+ C GH AR+C + CY C + GHI RNC ++ Y+
Sbjct: 98 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 150
Score = 44.8 bits (101), Expect = 6e-05
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Frame = +2
Query: 380 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCYVCGKPGHISR 532
T +R P G R+ ++ C+NC GH +R+C D CY CG+ GHI R
Sbjct: 75 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 134
Query: 533 EC 538
C
Sbjct: 135 NC 136
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +2
Query: 140 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYR 304
C+ C GH+AR+CT G + KC++C GH R+CK + R
Sbjct: 101 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 145
>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 119
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Frame = +2
Query: 350 DEPSCYNCNKTGHIARNCPEGGR-ESATQTCYNCNKSGHISRNCPDGTKT-------CYV 505
D +CY C K GH AR+C + +A TCY C++ GH S CP+ CY
Sbjct: 32 DPRACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYW 91
Query: 506 CGKPGH 523
CG H
Sbjct: 92 CGNQDH 97
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Frame = +2
Query: 296 CYRCNGTGHIAREC--AQSPDEP--SCYNCNKTGHIARNCPEGGRESATQT--CYNCNKS 457
CY+C GH AR C P +CY C++ GH + CP + CY C
Sbjct: 36 CYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYWCGNQ 95
Query: 458 GH 463
H
Sbjct: 96 DH 97
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Frame = +2
Query: 431 QTCYNCNKSGHISRNCPDGTK------TCYVCGKPGHISRECDEAR 550
+ CY C K GH +R+C T+ TCY C + GH S C R
Sbjct: 34 RACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKR 79
Score = 37.1 bits (82), Expect = 0.011
Identities = 21/61 (34%), Positives = 30/61 (49%)
Frame = +2
Query: 140 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 319
CYKC + GHFAR C VV++ + C+ C+ GH + C + R + N G
Sbjct: 36 CYKCGKLGHFARSC---HVVTQPT---TAYITCYFCSEEGHRSNGCPNK--RTDQVNPKG 87
Query: 320 H 322
H
Sbjct: 88 H 88
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 48.4 bits (110), Expect = 4e-06
Identities = 30/89 (33%), Positives = 36/89 (40%), Gaps = 12/89 (13%)
Frame = +2
Query: 188 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRC------------YRCNGTGHIAR 331
GG R G R C+KC GH ARDC E Y G G+
Sbjct: 116 GGYGGRGGG-GRGGSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGG 174
Query: 332 ECAQSPDEPSCYNCNKTGHIARNCPEGGR 418
SCY+C ++GH AR+C GGR
Sbjct: 175 GRGGGGGGGSCYSCGESGHFARDCTSGGR 203
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = +2
Query: 134 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFA--RDCKEEADRCYRC 307
S CYKC GH AR+C++GG G + G+ R CY C
Sbjct: 129 SDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSC 188
Query: 308 NGTGHIAREC 337
+GH AR+C
Sbjct: 189 GESGHFARDC 198
Score = 41.1 bits (92), Expect = 7e-04
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Frame = +2
Query: 362 CYNCNKTGHIARNCPEGGRESATQTC-------YNCNKSGHIS--RNCPDGTKTCYVCGK 514
CY C + GH+AR+C EGG Y G+ R G +CY CG+
Sbjct: 131 CYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSCGE 190
Query: 515 PGHISREC 538
GH +R+C
Sbjct: 191 SGHFARDC 198
Score = 37.5 bits (83), Expect = 0.008
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2
Query: 140 CYKCNRTGHFARECTQGG 193
CY C +GHFAR+CT GG
Sbjct: 185 CYSCGESGHFARDCTSGG 202
Score = 35.1 bits (77), Expect = 0.045
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 485 GTKTCYVCGKPGHISRECDE 544
G CY CG+PGH++R+C E
Sbjct: 127 GGSDCYKCGEPGHMARDCSE 146
Score = 31.1 bits (67), Expect = 0.73
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 410 GGRESATQTCYNCNKSGHISRNCPDG 487
GG CY C + GH++R+C +G
Sbjct: 122 GGGGRGGSDCYKCGEPGHMARDCSEG 147
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 48.4 bits (110), Expect = 4e-06
Identities = 26/78 (33%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Frame = +2
Query: 188 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP--S 361
GG S G CFKC GH AR+C + G G S
Sbjct: 122 GGRGSGGRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLS 181
Query: 362 CYNCNKTGHIARNCPEGG 415
CY+C ++GH AR+C GG
Sbjct: 182 CYSCGESGHFARDCTSGG 199
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/64 (34%), Positives = 33/64 (51%)
Frame = +2
Query: 296 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 475
C++C GH+AREC+Q Y+ G + GG +CY+C +SGH +R+
Sbjct: 138 CFKCGEPGHMARECSQGGGG---YSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARD 194
Query: 476 CPDG 487
C G
Sbjct: 195 CTSG 198
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/58 (41%), Positives = 28/58 (48%), Gaps = 12/58 (20%)
Frame = +2
Query: 140 CYKCNRTGHFARECTQ-GGVVSRDSGFNRQRE-----------KCFKCNRTGHFARDC 277
C+KC GH AREC+Q GG S G R C+ C +GHFARDC
Sbjct: 138 CFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARDC 195
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/60 (35%), Positives = 30/60 (50%)
Frame = +2
Query: 359 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 538
SC+ C + GH+AR C +GG + SG G +CY CG+ GH +R+C
Sbjct: 137 SCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGG-GGGGGGGGLSCYSCGESGHFARDC 195
Score = 37.5 bits (83), Expect = 0.008
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2
Query: 140 CYKCNRTGHFARECTQGG 193
CY C +GHFAR+CT GG
Sbjct: 182 CYSCGESGHFARDCTSGG 199
Score = 34.7 bits (76), Expect = 0.059
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +2
Query: 485 GTKTCYVCGKPGHISRECDE 544
G +C+ CG+PGH++REC +
Sbjct: 134 GDNSCFKCGEPGHMARECSQ 153
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = +2
Query: 383 GHIARNCPEGGRESATQTCYNCNKSGHISRNCPDG 487
G+ R G +C+ C + GH++R C G
Sbjct: 120 GYGGRGSGGRGGGGGDNSCFKCGEPGHMARECSQG 154
>At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 260
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Frame = +2
Query: 434 TCYNCNKSGHISRNCPDGT---KTCYVCGKPGHISREC 538
TCY+C + HI+ +CP T K+C++C H +R+C
Sbjct: 144 TCYSCGEKDHITVSCPTLTNCRKSCFICASLEHGARQC 181
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/84 (21%), Positives = 26/84 (30%)
Frame = +2
Query: 302 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 481
+ I C + DE N + R E G ++ +
Sbjct: 85 KLEAANEIVTHCVERQDED-----NMVEDVVRGEEEDGETTSNSVMTKLLRGARYFDPLD 139
Query: 482 DGTKTCYVCGKPGHISRECDEARN 553
G TCY CG+ HI+ C N
Sbjct: 140 AGWVTCYSCGEKDHITVSCPTLTN 163
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = +2
Query: 188 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD 292
GG SR G ++CFKC R GH+ARDC D
Sbjct: 104 GGYSSRGKG---TEDECFKCRRPGHWARDCPSTGD 135
Score = 31.5 bits (68), Expect = 0.55
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 140 CYKCNRTGHFARECTQGG 193
C+KC R GH+AR+C G
Sbjct: 117 CFKCRRPGHWARDCPSTG 134
Score = 31.1 bits (67), Expect = 0.73
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 353 EPSCYNCNKTGHIARNCPEGG 415
E C+ C + GH AR+CP G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134
Score = 30.7 bits (66), Expect = 0.96
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 257 GHFARDCKEEADRCYRCNGTGHIARECAQSPDE 355
G ++ K D C++C GH AR+C + D+
Sbjct: 104 GGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +2
Query: 374 NKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 538
NK + + P+ G E Q K G S C+ C +PGH +R+C
Sbjct: 80 NKVISVNKAEPKVGGEDVDQL----KKGGGYSSRGKGTEDECFKCRRPGHWARDC 130
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = +2
Query: 188 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD 292
GG SR G ++CFKC R GH+ARDC D
Sbjct: 104 GGYSSRGKG---TEDECFKCRRPGHWARDCPSTGD 135
Score = 31.5 bits (68), Expect = 0.55
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 140 CYKCNRTGHFARECTQGG 193
C+KC R GH+AR+C G
Sbjct: 117 CFKCRRPGHWARDCPSTG 134
Score = 31.1 bits (67), Expect = 0.73
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 353 EPSCYNCNKTGHIARNCPEGG 415
E C+ C + GH AR+CP G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134
Score = 30.7 bits (66), Expect = 0.96
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 257 GHFARDCKEEADRCYRCNGTGHIARECAQSPDE 355
G ++ K D C++C GH AR+C + D+
Sbjct: 104 GGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +2
Query: 374 NKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 538
NK + + P+ G E Q K G S C+ C +PGH +R+C
Sbjct: 80 NKVISVNKAEPKVGGEDVDQL----KKGGGYSSRGKGTEDECFKCRRPGHWARDC 130
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 9/40 (22%)
Frame = +2
Query: 203 RDSGFNRQREK---------CFKCNRTGHFARDCKEEADR 295
RD G++R R + CFKC + GHFAR+C E+ R
Sbjct: 100 RDRGYDRDRSRPSGGRGGGDCFKCGKPGHFARECPSESSR 139
Score = 34.3 bits (75), Expect = 0.078
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +2
Query: 140 CYKCNRTGHFARECTQGGVVSRDSG 214
C+KC + GHFAREC SRD G
Sbjct: 120 CFKCGKPGHFARECPSES--SRDGG 142
Score = 33.1 bits (72), Expect = 0.18
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 485 GTKTCYVCGKPGHISREC 538
G C+ CGKPGH +REC
Sbjct: 116 GGGDCFKCGKPGHFAREC 133
Score = 30.7 bits (66), Expect = 0.96
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Frame = +2
Query: 362 CYNCNKTGHIARNCPE------GGRESATQTCYNCNKSGHISRNCPDGTK 493
C+ C K GH AR CP GGR S+ Y+ + +++ G K
Sbjct: 120 CFKCGKPGHFARECPSESSRDGGGRFSSKDDRYSSKDDRYGAKDDRYGAK 169
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 185 QGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 337
QGG RD+ +R R++ + +R+ C++C GH AREC
Sbjct: 87 QGGA-GRDNDGDRGRDRGYDRDRSRPSGG---RGGGDCFKCGKPGHFAREC 133
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 125 MSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQR 229
+ S CY+C GHFAREC +G G V R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
Score = 32.7 bits (71), Expect = 0.24
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 185 QGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 280
+GG R G + KC++C GHFAR+C+
Sbjct: 76 RGGGGGRRGGI--EDSKCYECGELGHFARECR 105
Score = 31.5 bits (68), Expect = 0.55
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +2
Query: 197 VSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 337
+ R +G+ + K R G R E +CY C GH AREC
Sbjct: 58 LDRKNGWRVELSHKDKGGRGGGGGRRGGIEDSKCYECGELGHFAREC 104
Score = 29.9 bits (64), Expect = 1.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 350 DEPSCYNCNKTGHIARNCPEG 412
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 497 CYVCGKPGHISRECDEAR 550
CY CG+ GH +REC R
Sbjct: 91 CYECGELGHFARECRRGR 108
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +2
Query: 410 GGRESATQT--CYNCNKSGHISRNCPDG 487
GGR + CY C + GH +R C G
Sbjct: 80 GGRRGGIEDSKCYECGELGHFARECRRG 107
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 125 MSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQR 229
+ S CY+C GHFAREC +G G V R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
Score = 32.7 bits (71), Expect = 0.24
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 185 QGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 280
+GG R G + KC++C GHFAR+C+
Sbjct: 76 RGGGGGRRGGI--EDSKCYECGELGHFARECR 105
Score = 31.5 bits (68), Expect = 0.55
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +2
Query: 197 VSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 337
+ R +G+ + K R G R E +CY C GH AREC
Sbjct: 58 LDRKNGWRVELSHKDKGGRGGGGGRRGGIEDSKCYECGELGHFAREC 104
Score = 29.9 bits (64), Expect = 1.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 350 DEPSCYNCNKTGHIARNCPEG 412
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 497 CYVCGKPGHISRECDEAR 550
CY CG+ GH +REC R
Sbjct: 91 CYECGELGHFARECRRGR 108
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +2
Query: 410 GGRESATQT--CYNCNKSGHISRNCPDG 487
GGR + CY C + GH +R C G
Sbjct: 80 GGRRGGIEDSKCYECGELGHFARECRRG 107
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +2
Query: 140 CYKCNRTGHFARECTQGGVVSRDSGFNRQR 229
CY+C TGHFAREC G R +R R
Sbjct: 101 CYECGETGHFARECRNRGGTGRRRSKSRSR 130
Score = 33.9 bits (74), Expect = 0.10
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +2
Query: 233 KCFKCNRTGHFARDCK 280
KC++C TGHFAR+C+
Sbjct: 100 KCYECGETGHFARECR 115
Score = 31.5 bits (68), Expect = 0.55
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 410 GGRESATQTCYNCNKSGHISRNC 478
GGR + CY C ++GH +R C
Sbjct: 92 GGRGGSDLKCYECGETGHFAREC 114
Score = 31.1 bits (67), Expect = 0.73
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 293 RCYRCNGTGHIAREC 337
+CY C TGH AREC
Sbjct: 100 KCYECGETGHFAREC 114
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 362 CYNCNKTGHIARNCPEGG 415
CY C +TGH AR C G
Sbjct: 101 CYECGETGHFARECRNRG 118
Score = 29.5 bits (63), Expect = 2.2
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 497 CYVCGKPGHISREC 538
CY CG+ GH +REC
Sbjct: 101 CYECGETGHFAREC 114
>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 947
Score = 37.1 bits (82), Expect = 0.011
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +2
Query: 224 QREKCFKCNRTGHFARDC 277
Q+EKCF C +TGHFA DC
Sbjct: 261 QQEKCFVCGQTGHFASDC 278
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +2
Query: 323 IARECAQSP-DEPSCYNCNKTGHIARNCP 406
I RE P + C+ C +TGH A +CP
Sbjct: 251 ILREVITYPGQQEKCFVCGQTGHFASDCP 279
Score = 27.9 bits (59), Expect = 6.8
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +2
Query: 479 PDGTKTCYVCGKPGHISREC 538
P + C+VCG+ GH + +C
Sbjct: 259 PGQQEKCFVCGQTGHFASDC 278
Score = 27.9 bits (59), Expect = 6.8
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 140 CYKCNRTGHFAREC 181
C+ C +TGHFA +C
Sbjct: 265 CFVCGQTGHFASDC 278
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 35.5 bits (78), Expect = 0.034
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +2
Query: 140 CYKCNRTGHFAREC-TQGGVVSRDSGFNRQR 229
CY+C +GHFAREC ++GG R +R R
Sbjct: 98 CYECGESGHFARECRSRGGSGGRRRSRSRSR 128
Score = 32.7 bits (71), Expect = 0.24
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +2
Query: 188 GGVVSRDSGFNRQRE--KCFKCNRTGHFARDCK 280
GG D G R KC++C +GHFAR+C+
Sbjct: 80 GGRGGGDGGRGRGGSDLKCYECGESGHFARECR 112
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 413 GRESATQTCYNCNKSGHISRNC 478
GR + CY C +SGH +R C
Sbjct: 90 GRGGSDLKCYECGESGHFAREC 111
Score = 29.5 bits (63), Expect = 2.2
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 293 RCYRCNGTGHIAREC 337
+CY C +GH AREC
Sbjct: 97 KCYECGESGHFAREC 111
Score = 29.5 bits (63), Expect = 2.2
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 497 CYVCGKPGHISREC 538
CY CG+ GH +REC
Sbjct: 98 CYECGESGHFAREC 111
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +2
Query: 362 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 481
CY C ++GH AR C G + + ++S R P
Sbjct: 98 CYECGESGHFARECRSRGGSGGRRRSRSRSRSPPRYRKSP 137
>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 831
Score = 35.1 bits (77), Expect = 0.045
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +2
Query: 236 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 406
CF C + GH RDC E D R + +I+ + C C + H A CP
Sbjct: 604 CFYCGKKGHCLRDCLEVTDTELR-DLVQNISVRNGREEASSLCIRCFQLSHWAATCP 659
Score = 33.5 bits (73), Expect = 0.14
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 16/73 (21%)
Frame = +2
Query: 314 TGHIARECAQSPDEPSCYNCNKTGHIARNCPE----------------GGRESATQTCYN 445
+G +A + + C+ C K GH R+C E GRE A+ C
Sbjct: 588 SGSLAENAEEEQRDLICFYCGKKGHCLRDCLEVTDTELRDLVQNISVRNGREEASSLCIR 647
Query: 446 CNKSGHISRNCPD 484
C + H + CP+
Sbjct: 648 CFQLSHWAATCPN 660
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Frame = +2
Query: 137 VCYKCNRTGHFARECTQ------GGVVSRDSGFNRQREK---CFKCNRTGHFARDC 277
+C+ C + GH R+C + +V S N + E C +C + H+A C
Sbjct: 603 ICFYCGKKGHCLRDCLEVTDTELRDLVQNISVRNGREEASSLCIRCFQLSHWAATC 658
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 35.1 bits (77), Expect = 0.045
Identities = 33/148 (22%), Positives = 51/148 (34%), Gaps = 11/148 (7%)
Frame = +2
Query: 128 SSSVCYKCNRTGHFARECTQGGVVSRDSGFNR-QREKCFKCNRTGHFARDCKEEADRCYR 304
+S Y N T E GG + G + +R C++C GH + C +
Sbjct: 444 NSGDSYYMNETYASTNETYNGGYSASAVGTGKVKRRNCYECGEKGHLSTACPIKLQNTSH 503
Query: 305 CNGT-GHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQT------CYNCNKSGH 463
N T H E P + + Y+ K N + + T N
Sbjct: 504 TNSTLDHQTVEA--GPTQVTSYSLQKKTRDTENNGGSFMDESYATVPISIDVTNGANDAS 561
Query: 464 ISRNCPDG---TKTCYVCGKPGHISREC 538
++ G + CY CG+ GH+S C
Sbjct: 562 LTSAVSTGKIKKRNCYECGEKGHLSSAC 589
Score = 33.5 bits (73), Expect = 0.14
Identities = 22/105 (20%), Positives = 36/105 (34%)
Frame = +2
Query: 224 QREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 403
+R C++C GH + C + + + +E Y K +
Sbjct: 393 KRRVCYECGEKGHLSTACPIKLQKADD-QANSKLGQETVDGRPAMQSYGLPKNSGDSYYM 451
Query: 404 PEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 538
E ++T YN S + CY CG+ GH+S C
Sbjct: 452 NE--TYASTNETYNGGYSASAVGTGKVKRRNCYECGEKGHLSTAC 494
Score = 29.1 bits (62), Expect = 2.9
Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 2/117 (1%)
Frame = +2
Query: 140 CYKCNRTGHFARECT--QGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNG 313
CY+C GH + C +S + Q + T + + + + NG
Sbjct: 481 CYECGEKGHLSTACPIKLQNTSHTNSTLDHQTVEAGPTQVTSYSLQKKTRDTEN----NG 536
Query: 314 TGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPD 484
+ A P N + G + + CY C + GH+S CP+
Sbjct: 537 GSFMDESYATVPISIDVTNGANDASLTSAVSTG--KIKKRNCYECGEKGHLSSACPN 591
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 34.7 bits (76), Expect = 0.059
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +2
Query: 230 EKCFKCNRTGHFARDC 277
++CFKC R GH+ARDC
Sbjct: 126 DECFKCGRVGHWARDC 141
Score = 32.7 bits (71), Expect = 0.24
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 140 CYKCNRTGHFARECTQGG 193
C+KC R GH+AR+C G
Sbjct: 128 CFKCGRVGHWARDCPSAG 145
Score = 32.3 bits (70), Expect = 0.31
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 353 EPSCYNCNKTGHIARNCPEGG 415
E C+ C + GH AR+CP G
Sbjct: 125 EDECFKCGRVGHWARDCPSAG 145
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = +2
Query: 410 GGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRECDEA 547
GGR+S + G G C+ CG+ GH +R+C A
Sbjct: 99 GGRDSGYSIAGKGSFGGGGGGGGRVGEDECFKCGRVGHWARDCPSA 144
Score = 27.5 bits (58), Expect = 8.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +2
Query: 290 DRCYRCNGTGHIAREC 337
D C++C GH AR+C
Sbjct: 126 DECFKCGRVGHWARDC 141
>At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein
contains Pfam profile: PF00098 zinc knuckle
Length = 262
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Frame = +2
Query: 362 CYNCNKTGHIARNC-------PEGGRESATQTCYNCNKSGHISRNCPDG 487
C+NC H+ARNC P+ S + + N G NC DG
Sbjct: 88 CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNCGDG 136
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 10/55 (18%)
Frame = +2
Query: 296 CYRCNGTGHIAREC----AQSPD------EPSCYNCNKTGHIARNCPEGGRESAT 430
C+ C H+AR C PD P + N G NC +GG S T
Sbjct: 88 CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNCGDGGTSSGT 142
>At4g19130.1 68417.m02823 replication protein-related similar to
replication protein A 70kDa [Oryza sativa] GI:13536993;
contains Pfam profile PF00098: Zinc knuckle
Length = 461
Score = 33.1 bits (72), Expect = 0.18
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 368 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 493
+ +++G + GG AT +C C SGH+S CP TK
Sbjct: 392 HAHQSGQSGNHYSGGG---ATTSCNVCGNSGHVSAKCPGATK 430
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +2
Query: 443 NCNKSGHISRNCPDG--TKTCYVCGKPGHISRECDEA 547
+ ++SG + G T +C VCG GH+S +C A
Sbjct: 392 HAHQSGQSGNHYSGGGATTSCNVCGNSGHVSAKCPGA 428
>At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 282
Score = 33.1 bits (72), Expect = 0.18
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 236 CFKCNRTGHFARDCKEEA 289
CFKC R GH++RDC A
Sbjct: 8 CFKCGRPGHWSRDCPSSA 25
Score = 31.5 bits (68), Expect = 0.55
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 419 ESATQTCYNCNKSGHISRNCP 481
ESA C+ C + GH SR+CP
Sbjct: 2 ESAPTGCFKCGRPGHWSRDCP 22
Score = 30.3 bits (65), Expect = 1.3
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +2
Query: 497 CYVCGKPGHISREC 538
C+ CG+PGH SR+C
Sbjct: 8 CFKCGRPGHWSRDC 21
Score = 29.9 bits (64), Expect = 1.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 140 CYKCNRTGHFARECTQGGVVS 202
C+KC R GH++R+C V+
Sbjct: 8 CFKCGRPGHWSRDCPSSAPVA 28
Score = 27.9 bits (59), Expect = 6.8
Identities = 9/38 (23%), Positives = 17/38 (44%)
Frame = +2
Query: 362 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 475
C+ C + GH +R+CP + + + + I N
Sbjct: 8 CFKCGRPGHWSRDCPSSAPVAGNNSVSSSSAPSQIPNN 45
>At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)
identical to SP|Q9SI64 Arginine decarboxylase 1 (EC
4.1.1.19) (ARGDC 1) (ADC 1) (ADC-O) {Arabidopsis
thaliana}
Length = 702
Score = 33.1 bits (72), Expect = 0.18
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +1
Query: 349 GRAVVLQLQQDGPHRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQ 492
G +VV LQ DGPH ++R G AD+L Q P L + +H+
Sbjct: 578 GPSVVRVLQSDGPHGFAVTRAVMGQSSADVLRAMQHEPELMFQTLKHR 625
>At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar to
Chaperone protein dnaJ (SP:Q9WZV3) [Thermotoga maritima]
Length = 97
Score = 32.7 bits (71), Expect = 0.24
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +2
Query: 293 RCYRCNGTGHIARECAQ-SPDEPSCYNCNKTGHIA-RNCPEGG 415
RC CNGTG + C++ S + C C+ +G A NC G
Sbjct: 37 RCPTCNGTGRVTCFCSRWSDGDVGCRRCSGSGRAACSNCGGSG 79
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 32.3 bits (70), Expect = 0.31
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 416 RESATQTCYNCNKSGHISRNCPD 484
RES +C+ C KSGH + +CPD
Sbjct: 721 RESFGGSCFICGKSGHRATDCPD 743
Score = 29.1 bits (62), Expect = 2.9
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +2
Query: 494 TCYVCGKPGHISRECDEAR 550
+C++CGK GH + +C + R
Sbjct: 727 SCFICGKSGHRATDCPDKR 745
Score = 28.7 bits (61), Expect = 3.9
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 359 SCYNCNKTGHIARNCPE 409
SC+ C K+GH A +CP+
Sbjct: 727 SCFICGKSGHRATDCPD 743
>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
Length = 1020
Score = 31.9 bits (69), Expect = 0.41
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 224 QREKCFKCNRTGHFARDCK 280
Q+E+CF C + GHFA +C+
Sbjct: 260 QQERCFLCGQMGHFASNCE 278
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +2
Query: 323 IARECAQSPDEPS-CYNCNKTGHIARNC 403
I RE +P + C+ C + GH A NC
Sbjct: 250 ILREVVYTPGQQERCFLCGQMGHFASNC 277
>At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 1080
Score = 31.5 bits (68), Expect = 0.55
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 404 PEGGRESATQTCYNCNKSGHISRNC 478
P + A + CY C K GH++R+C
Sbjct: 915 PSEETDDAVKICYRCKKVGHLARDC 939
Score = 31.5 bits (68), Expect = 0.55
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 467 SRNCPDGTKTCYVCGKPGHISREC 538
S D K CY C K GH++R+C
Sbjct: 916 SEETDDAVKICYRCKKVGHLARDC 939
Score = 30.7 bits (66), Expect = 0.96
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +2
Query: 137 VCYKCNRTGHFAREC 181
+CY+C + GH AR+C
Sbjct: 925 ICYRCKKVGHLARDC 939
Score = 30.7 bits (66), Expect = 0.96
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Frame = +2
Query: 236 CFKCNRTGHFARDC--KEEAD 292
C++C + GH ARDC KE +D
Sbjct: 926 CYRCKKVGHLARDCHGKETSD 946
Score = 30.3 bits (65), Expect = 1.3
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 362 CYNCNKTGHIARNC 403
CY C K GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
Score = 29.9 bits (64), Expect = 1.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 296 CYRCNGTGHIAREC 337
CYRC GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
>At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 532
Score = 31.5 bits (68), Expect = 0.55
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +2
Query: 350 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 457
D P C+NC H R CP SA + KS
Sbjct: 239 DPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQKS 274
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +2
Query: 281 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 415
++ RC+ C G H REC + D + + K RN G
Sbjct: 238 DDPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQKSKRNQNSSG 282
>At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 474
Score = 31.5 bits (68), Expect = 0.55
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 353 EPSCYNCNKTGHIARNCPEGGRESATQ 433
E +CY C + GHIA+ CP RE+ T+
Sbjct: 224 ELTCYRCKQEGHIAKICPT--RETTTK 248
Score = 30.7 bits (66), Expect = 0.96
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 434 TCYNCNKSGHISRNCPDGTKTCYV 505
TCY C + GHI++ CP T V
Sbjct: 226 TCYRCKQEGHIAKICPTRETTTKV 249
>At4g34710.2 68417.m04927 arginine decarboxylase 2 (SPE2) identical
to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19)
(ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
Length = 711
Score = 31.1 bits (67), Expect = 0.73
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +1
Query: 349 GRAVVLQLQQDGPHRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQ 492
G +VV Q DGPH ++R G AD+L Q P L + +H+
Sbjct: 590 GPSVVRVSQSDGPHSFAVTRAVPGQSSADVLRAMQHEPELMFQTLKHR 637
>At4g34710.1 68417.m04926 arginine decarboxylase 2 (SPE2) identical
to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19)
(ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
Length = 711
Score = 31.1 bits (67), Expect = 0.73
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +1
Query: 349 GRAVVLQLQQDGPHRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQ 492
G +VV Q DGPH ++R G AD+L Q P L + +H+
Sbjct: 590 GPSVVRVSQSDGPHSFAVTRAVPGQSSADVLRAMQHEPELMFQTLKHR 637
>At3g31950.1 68416.m04046 hypothetical protein
Length = 507
Score = 31.1 bits (67), Expect = 0.73
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Frame = +2
Query: 302 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC----PEGGRESATQTCYNCNKSGHIS 469
R + R+ A +P + C C T H+ +C P CY C GH+S
Sbjct: 268 RATARKSVGRKLA-TPAKRPCDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCRGLGHVS 326
Query: 470 RNCP 481
CP
Sbjct: 327 MYCP 330
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 9/46 (19%)
Frame = +2
Query: 227 REKCFKCNRTGHFARDC---------KEEADRCYRCNGTGHIAREC 337
+ C C T H DC + +CY C G GH++ C
Sbjct: 284 KRPCDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCRGLGHVSMYC 329
>At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak
similarity to Chaperone protein dnaJ (Swiss-Prot:Q9ZFC5)
[Methylovorus sp.]
Length = 419
Score = 31.1 bits (67), Expect = 0.73
Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 7/89 (7%)
Frame = +2
Query: 281 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEG---GRESATQTCYNCN 451
E ++C C G G + + EP Y N+ + G ++ + C NCN
Sbjct: 196 ETVEKCTGCTGRGDVVCPTCNADGEPGFYKENQMMKCSTCYGRGLVAHKDGSDTICTNCN 255
Query: 452 KSGHISRNCPD----GTKTCYVCGKPGHI 526
G + CP G C C G +
Sbjct: 256 GKGKLP--CPTCQSRGLIKCQTCDSTGSL 282
>At5g08730.1 68418.m01037 IBR domain-containing protein contains
similarity to Swiss-Prot:Q94981 ariadne-1 protein
(Ari-1) [Drosophila melanogaster]
Length = 500
Score = 30.7 bits (66), Expect = 0.96
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +2
Query: 401 CPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRECDEA 547
CP G E A + + N+ IS C G C+ CG H C +A
Sbjct: 169 CPASGCEYAVELQEDGNEDNVISVVCLCGHTFCWTCGLESHRPVSCKKA 217
>At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kinase
family protein low similarity to phosphatidylinositol
3,5-kinase [Candida albicans] GI:14571648; contains Pfam
profile PF01504: Phosphatidylinositol-4-phosphate
5-Kinase
Length = 1648
Score = 30.7 bits (66), Expect = 0.96
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +2
Query: 269 RDCKEEAD-RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 445
RDC+ A RCY G AR C + PS N + I E G SA ++
Sbjct: 126 RDCRNMASIRCYPSRGEEEEARYCGKQLLSPSSDNYQDSSDI-----ESGSVSARHELFS 180
Query: 446 CNKS 457
C S
Sbjct: 181 CKSS 184
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
Frame = +2
Query: 437 CYNCNKSGHISRNCPDGTKT------CYVCGKPGHISREC 538
C C + GH CP T T C +CG GH + +C
Sbjct: 363 CRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDC 402
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +2
Query: 350 DEPSCYNCNKTGHIARNCPEGGRESATQT-CYNCNKSGHISRNCP 481
DE C C + GH CP + C C GH + +CP
Sbjct: 359 DEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCP 403
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
Frame = +2
Query: 437 CYNCNKSGHISRNCPDGTKT------CYVCGKPGHISREC 538
C C + GH CP T T C +CG GH + +C
Sbjct: 363 CRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDC 402
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +2
Query: 350 DEPSCYNCNKTGHIARNCPEGGRESATQT-CYNCNKSGHISRNCP 481
DE C C + GH CP + C C GH + +CP
Sbjct: 359 DEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCP 403
>At5g47430.1 68418.m05844 expressed protein
Length = 879
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +2
Query: 302 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 415
R NG G E P C+ CN GH ++CP G
Sbjct: 191 RMNGRG-FGMERKTPPPGYVCHRCNIPGHFIQHCPTNG 227
Score = 28.7 bits (61), Expect = 3.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 137 VCYKCNRTGHFARECTQGG 193
VC++CN GHF + C G
Sbjct: 209 VCHRCNIPGHFIQHCPTNG 227
>At5g47390.1 68418.m05840 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 365
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 428 TQTCYNCNKSGHISRNCPD 484
T+ C +CN +GH SR CP+
Sbjct: 2 TRRCSHCNHNGHNSRTCPN 20
Score = 27.9 bits (59), Expect = 6.8
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 362 CYNCNKTGHIARNCPEGG 415
C +CN GH +R CP G
Sbjct: 5 CSHCNHNGHNSRTCPNRG 22
>At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 341
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 110 SKPIAMSSSVCYKCNRTGHFAREC 181
+KP + SVCY+C H+A+ C
Sbjct: 268 NKPRGKAKSVCYRCGMDDHWAKTC 291
>At4g39960.1 68417.m05660 DNAJ heat shock family protein similar to
SP|Q9S5A3 Chaperone protein dnaJ {Listeria
monocytogenes}; contains Pfam profiles PF00226 DnaJ
domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
central domain (4 repeats)
Length = 447
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +2
Query: 290 DRCYRCNGTGHIARECAQSPDEPS-CYNCNKTGHIARNCPEG-GRESATQTCYNCNKSGH 463
+ C CNG+G A++ +P+ C C G + + G TC CN +G
Sbjct: 228 ESCGTCNGSG------AKAGTKPTKCKTCGGQGQVVASTRTPLGVFQQVMTCSPCNGTGE 281
Query: 464 ISRNC 478
IS+ C
Sbjct: 282 ISKPC 286
>At4g17410.1 68417.m02607 expressed protein
Length = 744
Score = 30.3 bits (65), Expect = 1.3
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 137 VCYKCNRTGHFARECTQGG 193
VC++CN +GHF + C+ G
Sbjct: 120 VCHRCNVSGHFIQHCSTNG 138
>At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein
contains Pfam profile PF00098: Zinc knuckle
Length = 200
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +2
Query: 323 IARECAQSPDEP-SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 475
++R+ ++S E +C+ C + GH +CP E + Y ++ RN
Sbjct: 147 VSRDRSKSKGEKGACWICGEDGHYKNDCPSRNSEKPKEHAYKAQEASVPRRN 198
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +2
Query: 359 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK-TCYVCGKPGHISRE 535
S N N + + G + + + +S R+ G K C++CG+ GH +
Sbjct: 114 SVENQNLRKKLMKEKTAAGYKETAEELHVRRRSVSRDRSKSKGEKGACWICGEDGHYKND 173
Query: 536 CDEARN*PQP 565
C +RN +P
Sbjct: 174 C-PSRNSEKP 182
>At3g45480.1 68416.m04911 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 373
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/72 (30%), Positives = 27/72 (37%), Gaps = 11/72 (15%)
Frame = +2
Query: 329 RECAQSPDEPSCYNCNKTGHIARNCPE---GGRESAT---QTCYNCNKSGHISRN----- 475
R C + C NC H +C E GRE T + C +C +S
Sbjct: 267 RRCCYKCRKHFCINCKVPWHSNLSCKEHKSSGREPITTVWRQCRSCLHKIKLSEERMPVT 326
Query: 476 CPDGTKTCYVCG 511
C G K CY CG
Sbjct: 327 CRCGYKFCYACG 338
>At3g16350.1 68416.m02068 myb family transcription factor ; contains
Pfam profile: PF00249 Myb-like DNA-binding domain
Length = 387
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 428 TQTCYNCNKSGHISRNCPD-GTKTCYVCGKPG 520
T+ C +C+ +GH SR CP G TC G G
Sbjct: 2 TRRCSHCSNNGHNSRTCPTRGGGTCGGSGGGG 33
>At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 403
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +2
Query: 281 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 418
++ RC+ C H REC + D + N + RN G R
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +2
Query: 350 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 493
D P C+NC H R CP SA N + RN G++
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSAVS---NARRQHKRKRNQTPGSR 238
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Frame = +2
Query: 233 KCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDE--PSCY 367
+CF C H R+C DR N R+ Q+P PS Y
Sbjct: 197 RCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSRLPSRY 243
>At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 405
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +2
Query: 281 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 418
++ RC+ C H REC + D + N + RN G R
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +2
Query: 350 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 493
D P C+NC H R CP SA N + RN G++
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSAVS---NARRQHKRKRNQTPGSR 238
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Frame = +2
Query: 233 KCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDE--PSCY 367
+CF C H R+C DR N R+ Q+P PS Y
Sbjct: 197 RCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSRLPSRY 243
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 29.9 bits (64), Expect = 1.7
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 278 KEEADRCYRCNGTGHIARECAQSP 349
K + + C++C T HIA++C P
Sbjct: 336 KGKGNGCFKCGSTDHIAKDCVGGP 359
Score = 28.7 bits (61), Expect = 3.9
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 236 CFKCNRTGHFARDC 277
CFKC T H A+DC
Sbjct: 342 CFKCGSTDHIAKDC 355
Score = 27.5 bits (58), Expect = 8.9
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +2
Query: 140 CYKCNRTGHFARECTQG 190
C+KC T H A++C G
Sbjct: 342 CFKCGSTDHIAKDCVGG 358
>At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative
similar to Swiss-Prot:Q9NG98 DNA topoisomerase III alpha
[Drosophila melanogaster]
Length = 926
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +2
Query: 383 GHIARNCPEGGRESATQTCYNCNKSGHISRNCP 481
G N +G + C +C + GH S NCP
Sbjct: 749 GTAPSNNIQGSNTRQSNVCIHCQQRGHASTNCP 781
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = +2
Query: 362 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCG 511
C +C + GH + NCP S N + RN + T +C CG
Sbjct: 767 CIHCQQRGHASTNCP-----SRVPASRNSRPTATNPRN-DESTVSCNTCG 810
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Frame = +2
Query: 443 NCNKSGHISRNCPDGTKTCYVCGKPGHISRECDE----ARN*PQPP 568
N S I + CY CG GH+S EC + R P PP
Sbjct: 136 NGRASEFIKKRVYKDKSRCYECGDEGHLSYECPKNQLGPRERPPPP 181
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 98 AQEF-SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRD 208
A EF K + S CY+C GH + EC + + R+
Sbjct: 139 ASEFIKKRVYKDKSRCYECGDEGHLSYECPKNQLGPRE 176
Score = 28.3 bits (60), Expect = 5.1
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +2
Query: 281 EEADRCYRCNGTGHIARECAQS 346
++ RCY C GH++ EC ++
Sbjct: 149 KDKSRCYECGDEGHLSYECPKN 170
Score = 28.3 bits (60), Expect = 5.1
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +2
Query: 350 DEPSCYNCNKTGHIARNCPE 409
D+ CY C GH++ CP+
Sbjct: 150 DKSRCYECGDEGHLSYECPK 169
Score = 27.5 bits (58), Expect = 8.9
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +2
Query: 437 CYNCNKSGHISRNCP 481
CY C GH+S CP
Sbjct: 154 CYECGDEGHLSYECP 168
>At2g16690.1 68415.m01915 hypothetical protein similar to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 240
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 188 GGVVSRDSGFNRQREKCFKCNRTGHFARDC 277
G VVS + R R++CF C R H DC
Sbjct: 188 GEVVSVTFDYERIRKRCFFCQRLTHDKADC 217
>At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains
Pfam PF00684 : DnaJ central domain (4 repeats); similar
to bundle sheath defective protein 2 (GI:4732091) [Zea
mays]
Length = 154
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +2
Query: 278 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 457
+E C+ CNGTG AQ C C +G++ GG E C NC+ +
Sbjct: 81 RENTQPCFPCNGTG------AQ-----KCRLCVGSGNVTVEL--GGGEKEVSNCINCDGA 127
Query: 458 GHIS 469
G ++
Sbjct: 128 GSLT 131
>At1g10450.1 68414.m01176 paired amphipathic helix repeat-containing
protein similar to Sin3 protein [Yarrowia lipolytica]
GI:18076824; contains Pfam profile PF02671: Paired
amphipathic helix repeat
Length = 1173
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 9/71 (12%)
Frame = +2
Query: 155 RTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARD---------CKEEADRCYRC 307
R+ + C + G ++ + ++E C K + A + C EE +R C
Sbjct: 778 RSNKDKQSCDKKGAKNKTRAEDDKQENCHKLSENNKTASEMLVSGTKVSCHEENNRVMNC 837
Query: 308 NGTGHIARECA 340
NG G +A E A
Sbjct: 838 NGRGSVAGEMA 848
>At5g61670.2 68418.m07738 expressed protein
Length = 307
Score = 29.1 bits (62), Expect = 2.9
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Frame = +2
Query: 278 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP----EGGRES----ATQ 433
++E RC C GTG++A C C+ TG + P GG S T+
Sbjct: 224 QQEHKRCKYCLGTGYLA-----------CARCSSTGALVLTEPVSAIAGGNHSLSPPKTE 272
Query: 434 TCYNCNKSGHISRNCP 481
C NC+ +G + CP
Sbjct: 273 RCSNCSGAGKVM--CP 286
>At5g61670.1 68418.m07737 expressed protein
Length = 307
Score = 29.1 bits (62), Expect = 2.9
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Frame = +2
Query: 278 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP----EGGRES----ATQ 433
++E RC C GTG++A C C+ TG + P GG S T+
Sbjct: 224 QQEHKRCKYCLGTGYLA-----------CARCSSTGALVLTEPVSAIAGGNHSLSPPKTE 272
Query: 434 TCYNCNKSGHISRNCP 481
C NC+ +G + CP
Sbjct: 273 RCSNCSGAGKVM--CP 286
>At2g41570.1 68415.m05137 hypothetical protein similar to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 418
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 188 GGVVSRDSGFNRQREKCFKCNRTGHFARDC 277
G +VS + R R++CF C R H DC
Sbjct: 188 GEIVSVTFDYERIRKRCFLCQRLTHEKGDC 217
>At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein
contains INTERPRO domain, IPR001878: Zn-finger CCHC type
Length = 353
Score = 29.1 bits (62), Expect = 2.9
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 437 CYNCNKSGHISRNCPDGTKT 496
C++C++ GH ++NCP T T
Sbjct: 6 CFHCHQPGHWAKNCPLKTTT 25
Score = 29.1 bits (62), Expect = 2.9
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +2
Query: 362 CYNCNKTGHIARNCP 406
C++C++ GH A+NCP
Sbjct: 6 CFHCHQPGHWAKNCP 20
Score = 28.7 bits (61), Expect = 3.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 125 MSSSVCYKCNRTGHFAREC 181
MSS C+ C++ GH+A+ C
Sbjct: 1 MSSGDCFHCHQPGHWAKNC 19
>At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical to
XRN2 [Arabidopsis thaliana] GI:11875630; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 1012
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 215 FNRQREKCFKCNRTGHFARDCKEEADR 295
F + KCF C + GH A DC+ + R
Sbjct: 259 FPGEEGKCFLCGQEGHRAADCEGKIKR 285
>At5g21140.1 68418.m02524 expressed protein
Length = 312
Score = 28.7 bits (61), Expect = 3.9
Identities = 22/68 (32%), Positives = 29/68 (42%)
Frame = +2
Query: 329 RECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVC 508
R ++ D PSC CN+ G A CP G + C K R+ K C C
Sbjct: 187 RSWFRNNDVPSCEVCNEAGVKADLCPTEG--CPVRIHKYCLKKLLSQRD----DKRCSGC 240
Query: 509 GKPGHISR 532
GKP +S+
Sbjct: 241 GKPWPLSK 248
>At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar to
unknown protein (pir||T00468); contains Pfam PF00684 :
DnaJ central domain (4 repeats)
Length = 315
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +2
Query: 278 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 457
++E RC C GTG++ CA+ C + + R + + + T+ C NC+ +
Sbjct: 232 QQEKKRCKYCLGTGYL--PCARCSASGVCLSIDPITR-PRATNQLMQVATTKRCLNCSGA 288
Query: 458 GHISRNCP 481
G + CP
Sbjct: 289 GKVM--CP 294
>At5g06130.1 68418.m00681 chaperone protein dnaJ-related similar to
unknown protein (pir||T00468); contains Pfam PF00684 :
DnaJ central domain (4 repeats)
Length = 231
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +2
Query: 278 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 457
++E RC C GTG++ CA+ C + + R + + + T+ C NC+ +
Sbjct: 148 QQEKKRCKYCLGTGYL--PCARCSASGVCLSIDPITR-PRATNQLMQVATTKRCLNCSGA 204
Query: 458 GHISRNCP 481
G + CP
Sbjct: 205 GKVM--CP 210
>At4g06479.1 68417.m00885 hypothetical protein
Length = 370
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Frame = +2
Query: 296 CYRCNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNC 403
C C+ T H EC P D CY C GH++ C
Sbjct: 298 CEICSHTDHPTEECLYPPQTIPYTDDYAKCYYCEGMGHMSMYC 340
>At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 735
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 11/52 (21%)
Frame = +2
Query: 356 PSCYNCNKTGHIARNCPEGGRESAT-----------QTCYNCNKSGHISRNC 478
P C++C GHI C RE CY+ GHI RNC
Sbjct: 626 PVCHHCGVVGHIRPRCFRLLREKNRLMNAYDVRFHGPKCYHYGVQGHIKRNC 677
Score = 27.9 bits (59), Expect = 6.8
Identities = 23/76 (30%), Positives = 29/76 (38%)
Frame = +2
Query: 110 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEA 289
S+P + VC+ C GH C F REK NR + A D +
Sbjct: 618 SEPRRVFRPVCHHCGVVGHIRPRC-----------FRLLREK----NRLMN-AYDVRFHG 661
Query: 290 DRCYRCNGTGHIAREC 337
+CY GHI R C
Sbjct: 662 PKCYHYGVQGHIKRNC 677
>At2g38560.1 68415.m04737 transcription factor S-II (TFIIS)
domain-containing protein similar to SP|P49373
Transcription elongation factor S-II (TFIIS)
{Schizosaccharomyces pombe}; contains Pfam profile
PF01096: Transcription factor S-II (TFIIS)
Length = 378
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 473 CGRCGRTCCSYSRSASQTPAPPRDSSVRC 387
CGRCG+ C+Y + +++ P + V C
Sbjct: 340 CGRCGQRKCTYYQMQTRSADEPMTTYVTC 368
>At2g31850.1 68415.m03889 expressed protein
Length = 113
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Frame = -3
Query: 485 RRDSCGRCGRT---CCSYSRSASQTPAPPRDSSVRCGPSCCSCNTTARPGS 342
R+D G G + C S S P S SCC C++TA GS
Sbjct: 61 RQDDAGLSGSSTGSCSSPDSSTGSNSVPAPVPSPAPAGSCCCCSSTADSGS 111
>At2g07740.1 68415.m01002 zinc knuckle (CCHC-type) family protein
similar to zinc finger protein GB:AAA75253; some members
of this protein family have a weak CCHC zinc fingers
that is mostly from retroviral gag proteins
(nucleocapsid)
Length = 409
Score = 28.7 bits (61), Expect = 3.9
Identities = 24/88 (27%), Positives = 33/88 (37%), Gaps = 3/88 (3%)
Frame = +2
Query: 260 HFARDCKEEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPEGGRESAT 430
HFAR C + + GT + EC + E C C GH+A CP+
Sbjct: 159 HFARVCVK-VNLKQPLKGTVVVNGECYYASYEGLNVICSLCGVFGHLAGACPKRSPGPVV 217
Query: 431 QTCYNCNKSGHISRNCPDGTKTCYVCGK 514
Q + K +S G + CGK
Sbjct: 218 QAGASPRKGNDVSSRGIGGEEIRKECGK 245
>At4g30200.3 68417.m04295 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 702
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +2
Query: 368 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 475
NCN H A E G E + SGHI +N
Sbjct: 594 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 629
>At4g30200.2 68417.m04294 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 714
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +2
Query: 368 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 475
NCN H A E G E + SGHI +N
Sbjct: 606 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 641
>At4g30200.1 68417.m04293 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 685
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +2
Query: 368 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 475
NCN H A E G E + SGHI +N
Sbjct: 577 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 612
>At3g07650.2 68416.m00917 zinc finger (B-box type) family protein
similar to zinc finger protein GB:BAA33206 [Oryza
sativa]
Length = 372
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/54 (27%), Positives = 21/54 (38%)
Frame = +2
Query: 362 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGH 523
C +C+++ H A + R S T C CN R + C C GH
Sbjct: 25 CLSCDRSVHSANALSK--RHSRTLVCERCNAQPATVRCVEERVSLCQNCDWSGH 76
>At3g07650.1 68416.m00916 zinc finger (B-box type) family protein
similar to zinc finger protein GB:BAA33206 [Oryza
sativa]
Length = 372
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/54 (27%), Positives = 21/54 (38%)
Frame = +2
Query: 362 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGH 523
C +C+++ H A + R S T C CN R + C C GH
Sbjct: 25 CLSCDRSVHSANALSK--RHSRTLVCERCNAQPATVRCVEERVSLCQNCDWSGH 76
>At5g27220.1 68418.m03247 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1181
Score = 27.9 bits (59), Expect = 6.8
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +1
Query: 373 QQDGP-HRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQDVLRVRQARPHLARV 537
QQ+ P + +L R A VCD L L +R HL + + H DVLR +A A++
Sbjct: 633 QQNNPDQQVDLVRD-ASVCDEKTLQLL-LRGHLKKCDQLHLDVLRALKASSDPAKL 686
>At4g06526.1 68417.m00938 hypothetical protein
Length = 506
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Frame = +2
Query: 296 CYRCNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNCP 406
C C+ T H +EC P D C C GH++ CP
Sbjct: 282 CEICSHTDHPTKECLYPPHTMPYMDDCAKCSCCGGVGHMSMYCP 325
>At2g22360.1 68415.m02653 DNAJ heat shock family protein similar to
SP|Q9S5A3 Chaperone protein dnaJ {Listeria
monocytogenes}; contains Pfam profiles PF00226 DnaJ
domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
central domain (4 repeats)
Length = 442
Score = 27.9 bits (59), Expect = 6.8
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = +2
Query: 290 DRCYRCNGTGHIARECAQSPDEPS-CYNCNKTGHI--ARNCPEGGRESATQTCYNCNKSG 460
+ C C G+G A+ +P+ C C G + A P G + TC +CN +G
Sbjct: 222 ESCGTCEGSG------AKPGTKPTKCTTCGGQGQVVSAARTPLGVFQQV-MTCSSCNGTG 274
Query: 461 HISRNC 478
IS C
Sbjct: 275 EISTPC 280
>At1g40080.1 68414.m04737 hypothetical protein member of
hypothetical protein common family
Length = 154
Score = 27.9 bits (59), Expect = 6.8
Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 2/85 (2%)
Frame = +2
Query: 230 EKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSP--DEPSCYNCNKTGHIARNC 403
+KC N +A+ ++ Y TG+ C + D+P + N +
Sbjct: 71 QKCLGANNP--YAKFVEKNKGLAYEST-TGYYQMRCRWNVTHDKPVFIDMNNEKRCIMHP 127
Query: 404 PEGGRESATQTCYNCNKSGHISRNC 478
P +TC+ C K GH + C
Sbjct: 128 PFQPGRMVRRTCHRCKKVGHRCKKC 152
>At5g48250.1 68418.m05961 zinc finger (B-box type) family protein
contains similarity to CONSTANS homologs
Length = 373
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/54 (27%), Positives = 20/54 (37%)
Frame = +2
Query: 362 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGH 523
C +C++ H A + R S T C CN R + C C GH
Sbjct: 25 CLSCDRNVHSANALSK--RHSRTLVCERCNAQPASVRCSDERVSLCQNCDWSGH 76
>At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 516
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 7/41 (17%)
Frame = +2
Query: 305 CNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNCP 406
C H +C P D CY+C GH++ CP
Sbjct: 339 CGYIDHPTEQCLHPPQAMPYMVDCAKCYSCGGVGHVSMYCP 379
>At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR
class), putative similar to zinc finger protein
(GI:15811367) [Arabidopsis thaliana]; similar to
TIR-NBS-LRR (GI:27466164) [Arabidopsis thaliana]; similar
to disease resistance protein RPP1-WsB (GI:3860165)
[Arabidopsis thaliana]
Length = 1996
Score = 27.5 bits (58), Expect = 8.9
Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 5/80 (6%)
Frame = +2
Query: 212 GFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP-----SCYNCN 376
GF R+R C+ C C+ C+ + A +P +P +CY
Sbjct: 1549 GFTRKRHNCYNCGLV------------HCHACSSKKALKAALAPTPGKPHRVCDACYTKL 1596
Query: 377 KTGHIARNCPEGGRESATQT 436
K G N R S T T
Sbjct: 1597 KAGESGYNSNVANRNSTTPT 1616
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,211,487
Number of Sequences: 28952
Number of extensions: 295054
Number of successful extensions: 1621
Number of sequences better than 10.0: 87
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1367
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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