Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0283
         (624 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    26   0.29 
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    23   1.6  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   3.6  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   4.8  

>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 25.8 bits (54), Expect = 0.29
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 448 FPFQYHMHVPFNITIDFLTFRCVETA 371
           FPF Y   V F++    L F C+  A
Sbjct: 154 FPFDYKQPVVFDLVYFILAFACISIA 179


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 151 PRAPSLPLSPVFA 113
           P+ P LPL P+FA
Sbjct: 178 PQVPPLPLPPIFA 190


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = +1

Query: 145 PSDQISVPLPGPAETQPRQTQVSVTAPPPIEFALADTEHLVRETKETDRR 294
           P  Q  +  P P  T P  T  S ++    +   +D   L++ET    R+
Sbjct: 410 PPMQSQIINPQPQITSPSNTNTSTSSTNSNKPNSSDLNMLIKETMPLPRK 459


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 151 PRAPSLPLSPVF 116
           P+ P LPL P+F
Sbjct: 178 PQVPPLPLPPIF 189


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,391
Number of Sequences: 336
Number of extensions: 2515
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15979473
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)