Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0283
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch...    69   7e-13
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    26   3.8  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   5.1  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   5.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   6.7  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   6.7  
SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1...    25   6.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   6.7  

>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 68.5 bits (160), Expect = 7e-13
 Identities = 34/50 (68%), Positives = 38/50 (76%)
 Frame = +2

Query: 347 EMLKVMGFCGFDTTKGKKVDGNVEGDVHVVLKRKYRQYMNRKGGFNRPLD 496
           EM ++MGF GFDTT GKK  G+V G V+   K KYRQYMNR GGFNRPLD
Sbjct: 195 EMKRIMGFSGFDTTTGKK-HGDV-GQVYKQKKTKYRQYMNRPGGFNRPLD 242


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 546 QPILETIGQSSGI*ATKSSGLLNP 475
           +P LET   S+ I ++ SSG+LNP
Sbjct: 47  KPPLETASSSTPIPSSSSSGVLNP 70


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 223  PPPIEFALADTEHLVRET 276
            PPP EF L  TEH+  ++
Sbjct: 1568 PPPFEFPLQPTEHMFSDS 1585


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 172 PGPAETQPRQTQVSVTAPPPIEFALADTEHL 264
           P PA   P Q  V    PPPI   L+D +H+
Sbjct: 579 PLPAMADPAQN-VPQQLPPPIHSHLSDDQHI 608


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +1

Query: 133  GETAPSDQISVPLPGPAETQPRQTQVSVTAPPPI 234
            G  AP+  +S P   P    P Q       PPP+
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPM 1712


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 449 ISVSIPHARPLQHYHRLSYLSLCRNR 372
           I  S+ H  P QH   L +L+ C NR
Sbjct: 549 ILASLQHTSPTQHKAVLEFLNSCINR 574


>SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 221

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 608 KYELLINSITAVLRSQLICLSSPYSKQLDSHRVFKLRS 495
           KYEL       +L + L  LS   ++ LDS+++ K R+
Sbjct: 28  KYELQPLLTLGLLNASLTALSDLLAQALDSYKLLKFRN 65


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 145  PSDQISVPLPGPAETQPRQTQVSVTAPPPI 234
            PS    VP+P      P+ +  + +APPP+
Sbjct: 1037 PSTAPPVPIPTSTPPVPKSSSGAPSAPPPV 1066


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,119,951
Number of Sequences: 5004
Number of extensions: 41413
Number of successful extensions: 120
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)