Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0283
         (624 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_47894| Best HMM Match : CI-B14_5a (HMM E-Value=6.6)                 29   2.3  
SB_47264| Best HMM Match : Ion_trans (HMM E-Value=1.19951e-42)         29   3.1  
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)            29   4.1  
SB_50337| Best HMM Match : Extensin_1 (HMM E-Value=0.19)               29   4.1  
SB_31500| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)              28   7.1  
SB_45600| Best HMM Match : LTXXQ (HMM E-Value=1.8)                     28   7.1  
SB_42806| Best HMM Match : MORN (HMM E-Value=0)                        28   7.1  
SB_29317| Best HMM Match : Sushi (HMM E-Value=6.9e-26)                 27   9.4  
SB_30420| Best HMM Match : Sushi (HMM E-Value=2.2e-13)                 27   9.4  
SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 871

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +1

Query: 220 APPPIEFALADTEHLVRETKETDRRTPHYNTGRLRRKNSGGTGNVKGYGLLRFRHNE 390
           APP     + +      ET+  D  +P+ N  RL    S  TG+ KGYG + +   E
Sbjct: 109 APPESLLFVGNLPFEFTETQFGDLMSPYGNIERLFLVRSEVTGDSKGYGFVEYATRE 165


>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1705

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +3

Query: 87  PSAARRQYAAKTGERGRDGALGPDLGPAPWTGGDAAPTDAGL 212
           P   R +     GE G  G LGPD  P P  G   AP  +G+
Sbjct: 288 PGLDREEVVMPPGESGAAGDLGPDGPPGP-KGAPGAPGFSGI 328


>SB_47894| Best HMM Match : CI-B14_5a (HMM E-Value=6.6)
          Length = 167

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/71 (25%), Positives = 29/71 (40%)
 Frame = +1

Query: 121 QAREGETAPSDQISVPLPGPAETQPRQTQVSVTAPPPIEFALADTEHLVRETKETDRRTP 300
           Q+  G T P+ + + P P P E   +  +   +  P +E  +    HL+           
Sbjct: 81  QSTPGMTVPTSETATPTPLPKERCLKHGKAEHSFTPELEQTVPSCSHLISAN-------- 132

Query: 301 HYNTGRLRRKN 333
           HY    L+RKN
Sbjct: 133 HYKKENLKRKN 143


>SB_47264| Best HMM Match : Ion_trans (HMM E-Value=1.19951e-42)
          Length = 1172

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
 Frame = +1

Query: 121  QAREGETAPSDQISVPLPGPAETQPRQTQVSVTAPPPIEFALADTEHLVRETKETDRRTP 300
            + +E + +   +  +P P PAET  RQ++     P P+  A+   ++ VR+ K+ +    
Sbjct: 943  ELKERKKSEHHEKFLPPPPPAETDLRQSKWRKAKPIPVVLAI---KNFVRDNKQANGDQL 999

Query: 301  HYN-TGRLRRKNSGGTGNV 354
             ++    LRR  S GT +V
Sbjct: 1000 EFDGPPALRRVASFGTISV 1018


>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
          Length = 1439

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = +1

Query: 139 TAPSDQISVPLPGPAETQPRQTQVSVTAPPPIEFA 243
           T P+   SV  P PA   P      V APPP  FA
Sbjct: 335 TEPAPPSSVVAPPPAVPTPATAPPPVVAPPPSVFA 369


>SB_50337| Best HMM Match : Extensin_1 (HMM E-Value=0.19)
          Length = 86

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +1

Query: 139 TAPSDQISVPLPGPAETQPRQTQVSVTAPP 228
           T PS     P+  P  TQP  TQ  VT PP
Sbjct: 41  TPPSPNTPPPVTQPPVTQPPVTQPPVTQPP 70



 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 166 PLPGPAETQPRQTQVSVTAPPP 231
           P+  P  TQP  TQ  VT PPP
Sbjct: 55  PVTQPPVTQPPVTQPPVTQPPP 76


>SB_31500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1446

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 145  PSDQISVPLPGPAETQPRQTQVSVTAPPP 231
            P   IS+P P P  T   Q+  +   PPP
Sbjct: 993  PHRTISIPYPSPPHTTSSQSSQATHTPPP 1021


>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
          Length = 1903

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +3

Query: 114  AKTGERGRDGALGPDLGPAPWTGGDAAPTDAG 209
            A  G  GRDG +GP   P P +GG   P D G
Sbjct: 1711 APAGPPGRDGPMGP---PGP-SGGQGPPGDMG 1738


>SB_45600| Best HMM Match : LTXXQ (HMM E-Value=1.8)
          Length = 355

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +2

Query: 275 QKKPIGERPIITPADLEG 328
           +K P+ ++P++TPA LEG
Sbjct: 281 KKPPVPKKPVLTPAQLEG 298


>SB_42806| Best HMM Match : MORN (HMM E-Value=0)
          Length = 778

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 145 PSDQISVPLPGPAETQPRQTQVSVTAPPP 231
           P  ++  P PG A+  P   +V + +PPP
Sbjct: 634 PGVELGAPPPGSADKVPPSPEVQLPSPPP 662


>SB_29317| Best HMM Match : Sushi (HMM E-Value=6.9e-26)
          Length = 803

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 333 VFPSKSAGVIMGRSPIGFFCLTNEVLGIGEGE 238
           V P   AGVI G   + F CL  E+LG  + +
Sbjct: 29  VHPLDVAGVISGSEKVDFACLRLELLGCKDND 60


>SB_30420| Best HMM Match : Sushi (HMM E-Value=2.2e-13)
          Length = 124

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 333 VFPSKSAGVIMGRSPIGFFCLTNEVLGIGEGE 238
           V P   AGVI G   + F CL  E+LG  + +
Sbjct: 29  VHPLDVAGVISGSEKVDFACLRLELLGCKDND 60


>SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1548

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +1

Query: 163  VPLPGPAETQP--RQTQVSVTAPPPIEFA 243
            V  P P E +P  R+ +VS  APPP  FA
Sbjct: 1057 VSSPAPPEDKPPARRRKVSAVAPPPAIFA 1085


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,402,091
Number of Sequences: 59808
Number of extensions: 337453
Number of successful extensions: 1134
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)