Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0283
         (624 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    25   1.5  
AB097148-1|BAC82627.1|  357|Anopheles gambiae gag-like protein p...    25   2.0  
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    24   3.4  

>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
           topoisomerase protein.
          Length = 1039

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = -2

Query: 230 GGGAVTETCVCRGCVSAGPGSGTEIWSEGAVSPS 129
           GGG +T      GC  AG G G      G VS S
Sbjct: 183 GGGELTTGGGTNGCTKAGGGGGGTGTGGGLVSSS 216


>AB097148-1|BAC82627.1|  357|Anopheles gambiae gag-like protein
           protein.
          Length = 357

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +1

Query: 145 PSDQISVPLPGPAETQPRQTQVSVTAPPPIE 237
           P D +  P PGP+  +PR      T    +E
Sbjct: 295 PLDVLPAPFPGPSTDEPRTVTRKRTTESDVE 325


>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
            channel alpha subunitprotein.
          Length = 2139

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 567  ESTHLPQQPILETI 526
            E  HLPQ+PIL+ I
Sbjct: 1325 EDVHLPQRPILQDI 1338


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 550,110
Number of Sequences: 2352
Number of extensions: 10880
Number of successful extensions: 23
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 60632475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)