Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0283
(624 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75546-6|CAA99894.1| 155|Caenorhabditis elegans Hypothetical pr... 81 6e-16
L16560-3|AAA27998.1| 195|Caenorhabditis elegans Hypothetical pr... 31 0.51
AF016663-5|AAC70880.1| 864|Caenorhabditis elegans Hypothetical ... 31 0.51
U50312-9|AAA92325.1| 294|Caenorhabditis elegans Collagen protei... 29 2.0
U50312-7|AAA92323.2| 306|Caenorhabditis elegans Collagen protei... 29 2.0
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 29 2.7
Z92833-9|CAD54141.2| 665|Caenorhabditis elegans Hypothetical pr... 29 3.6
AL023842-11|CAD54168.2| 665|Caenorhabditis elegans Hypothetical... 29 3.6
U58755-13|AAB00702.1| 348|Caenorhabditis elegans Collagen prote... 28 4.7
U55373-4|ABR92605.1| 210|Caenorhabditis elegans Collagen protei... 28 4.7
AC091125-4|AAK27888.1| 732|Caenorhabditis elegans Hypothetical ... 28 4.7
Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z66524-3|CAB54303.1| 475|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z93377-6|CAB07572.2| 254|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z81567-3|CAB04587.1| 301|Caenorhabditis elegans Hypothetical pr... 27 8.2
L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein. 27 8.2
AC025726-18|AAK73910.1| 996|Caenorhabditis elegans Hypothetical... 27 8.2
AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical... 27 8.2
>Z75546-6|CAA99894.1| 155|Caenorhabditis elegans Hypothetical
protein R05D11.7 protein.
Length = 155
Score = 81.0 bits (191), Expect = 6e-16
Identities = 34/55 (61%), Positives = 45/55 (81%)
Frame = +2
Query: 338 EEQEMLKVMGFCGFDTTKGKKVDGNVEGDVHVVLKRKYRQYMNRKGGFNRPLDFV 502
+++ M+ MGF GFDTTK K+V+ NV+G V++ R+YRQYMNRKGGFNRPLDF+
Sbjct: 100 DDEAMMAAMGFGGFDTTKNKQVNDNVDGCVNIKKPRRYRQYMNRKGGFNRPLDFM 154
>L16560-3|AAA27998.1| 195|Caenorhabditis elegans Hypothetical
protein D2007.2 protein.
Length = 195
Score = 31.5 bits (68), Expect = 0.51
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 178 PAETQPRQTQVSVTAPPP-IEFALADTEHLVRETKET 285
P RQTQ ++AP P I AL+D E+L+R + +
Sbjct: 19 PGRQTGRQTQQQISAPEPMIAIALSDMEYLMRSARSS 55
>AF016663-5|AAC70880.1| 864|Caenorhabditis elegans Hypothetical
protein F21E9.5 protein.
Length = 864
Score = 31.5 bits (68), Expect = 0.51
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -2
Query: 395 YLSLCRNRKSP*PLTFPVPPEFFLLSLPVL*WGVLRS 285
Y SL R+RK+P P P PP LP +G +R+
Sbjct: 367 YTSLFRSRKTPPPPQLPTPPPIMAEPLPPFLFGEIRA 403
>U50312-9|AAA92325.1| 294|Caenorhabditis elegans Collagen protein
10 protein.
Length = 294
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +3
Query: 111 AAKTGERGRDGALGPD--LGPAPWTGGDAAPTDAG 209
A G G+DGA G D GPA G D AP +AG
Sbjct: 226 AGPAGPAGQDGAPGQDGQPGPAGPAGQDGAPGNAG 260
>U50312-7|AAA92323.2| 306|Caenorhabditis elegans Collagen protein
144 protein.
Length = 306
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +3
Query: 111 AAKTGERGRDGALGPD--LGPAPWTGGDAAPTDAG 209
A G G+DGA G D GPA G D AP +AG
Sbjct: 238 AGPAGPAGQDGAPGQDGQPGPAGPAGQDGAPGNAG 272
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +1
Query: 142 APSDQISVPLPGPAETQPRQTQVSVTAPPPIEF 240
AP Q +VP P P Q V V APPP +
Sbjct: 70 APYPQHAVPAPAPPLASYPQNAVPVPAPPPAPY 102
>Z92833-9|CAD54141.2| 665|Caenorhabditis elegans Hypothetical
protein F38A6.3d protein.
Length = 665
Score = 28.7 bits (61), Expect = 3.6
Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Frame = +1
Query: 127 REGETAPSDQISVPLPGPAETQPRQTQVSVTAPPPIEFALADTEHLVRETKETDR----R 294
R P+ +ISVPL PR+T PP D EH VRE ++ DR
Sbjct: 511 RTASGQPNRRISVPL------WPRRTSWIRHLVPPDRRHHTDEEHKVREVEQLDRLPRQH 564
Query: 295 TPHYNTGRLRRKNSGGTGNV 354
PH +T R + NV
Sbjct: 565 RPHCHTVPTTRHLQRASHNV 584
>AL023842-11|CAD54168.2| 665|Caenorhabditis elegans Hypothetical
protein F38A6.3d protein.
Length = 665
Score = 28.7 bits (61), Expect = 3.6
Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Frame = +1
Query: 127 REGETAPSDQISVPLPGPAETQPRQTQVSVTAPPPIEFALADTEHLVRETKETDR----R 294
R P+ +ISVPL PR+T PP D EH VRE ++ DR
Sbjct: 511 RTASGQPNRRISVPL------WPRRTSWIRHLVPPDRRHHTDEEHKVREVEQLDRLPRQH 564
Query: 295 TPHYNTGRLRRKNSGGTGNV 354
PH +T R + NV
Sbjct: 565 RPHCHTVPTTRHLQRASHNV 584
>U58755-13|AAB00702.1| 348|Caenorhabditis elegans Collagen protein
113 protein.
Length = 348
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 108 YAAKTGERGRDGALGPDLGPAPWTGGDAAPTDAGL 212
Y + G+RG DG GP +GP+ G P G+
Sbjct: 240 YPGRDGQRGNDGESGP-VGPSGQLGMPGEPGQIGM 273
>U55373-4|ABR92605.1| 210|Caenorhabditis elegans Collagen protein
140, isoform b protein.
Length = 210
Score = 28.3 bits (60), Expect = 4.7
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Frame = +3
Query: 111 AAKTGERGRDGALGPDLGP-APWTGG---DAAP-TDAG 209
A +G+ GR G GP GP P GG DAAP DAG
Sbjct: 162 AGPSGDNGRKGPPGPPGGPGGPGEGGDGEDAAPGPDAG 199
>AC091125-4|AAK27888.1| 732|Caenorhabditis elegans Hypothetical
protein Y67D2.6 protein.
Length = 732
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +1
Query: 124 AREGETAPSDQISVPLPGPAETQPRQTQVSVTAPP 228
AR G P D P GP + R T+ + APP
Sbjct: 19 ARRGFARPDDSADAPRTGPLIFEERSTENAGAAPP 53
>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical
protein F25C8.3b protein.
Length = 3175
Score = 27.9 bits (59), Expect = 6.2
Identities = 20/51 (39%), Positives = 23/51 (45%)
Frame = -1
Query: 621 CQSIQIRAPNKFYHCSPQESTHLPQQPILETIGQSSGI*ATKSSGLLNPPF 469
C I P H S Q S +PQ P+LE SS +T SS PPF
Sbjct: 409 CSGFSIEEP----HDSTQSSVEVPQHPVLE----SSMFLSTTSSASDVPPF 451
>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical
protein F25C8.3a protein.
Length = 3184
Score = 27.9 bits (59), Expect = 6.2
Identities = 20/51 (39%), Positives = 23/51 (45%)
Frame = -1
Query: 621 CQSIQIRAPNKFYHCSPQESTHLPQQPILETIGQSSGI*ATKSSGLLNPPF 469
C I P H S Q S +PQ P+LE SS +T SS PPF
Sbjct: 409 CSGFSIEEP----HDSTQSSVEVPQHPVLE----SSMFLSTTSSASDVPPF 451
>Z66524-3|CAB54303.1| 475|Caenorhabditis elegans Hypothetical
protein T13H5.6 protein.
Length = 475
Score = 27.9 bits (59), Expect = 6.2
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Frame = +1
Query: 139 TAPSDQISVPLPGP-AETQPRQTQVS--VTAPPPIEFALADTEHLVRETKETDRRTPHYN 309
T P + +PL P E + R T V+ V+ P L +HL E + +DR TP Y+
Sbjct: 263 TQPIKKKIMPLRRPDLEEENRGTNVTSLVSFDPKSATLLRIRQHL--EAEPSDRDTPDYD 320
Query: 310 T-GRLRRKNSG 339
RLR ++SG
Sbjct: 321 MYERLRSRSSG 331
>Z93377-6|CAB07572.2| 254|Caenorhabditis elegans Hypothetical
protein F13A7.10 protein.
Length = 254
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 172 PGPAETQPRQTQVSVTAPPPIEFALADTEHLVRETKETDRRTPHYNTG 315
PGP + Q ++TA P + A TE+ V KE + P+++ G
Sbjct: 206 PGPGYPKLSQWFKAITAIPEVAAASQSTENGVGSCKEYMKGLPYFDYG 253
>Z81567-3|CAB04587.1| 301|Caenorhabditis elegans Hypothetical
protein K08C9.4 protein.
Length = 301
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 123 GERGRDGALGPDLGPAPWTGGDAAP 197
G G+DG GPD G A GG+ AP
Sbjct: 241 GAPGKDGETGPD-GAAGEAGGEGAP 264
>L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.
Length = 2553
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 365 GFCGFDTTKGKKVDGNVEGDVHVVLKRKYRQ 457
G+ TT G+K+ ++G V ++LK+K Q
Sbjct: 404 GYYSVQTTDGEKIAQLIQGYVDIILKKKRTQ 434
>AC025726-18|AAK73910.1| 996|Caenorhabditis elegans Hypothetical
protein Y71G12B.11b protein.
Length = 996
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 365 GFCGFDTTKGKKVDGNVEGDVHVVLKRKYRQ 457
G+ TT G+K+ ++G V ++LK+K Q
Sbjct: 404 GYYSVQTTDGEKIAQLIQGYVDIILKKKRTQ 434
>AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical
protein Y71G12B.11a protein.
Length = 2553
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 365 GFCGFDTTKGKKVDGNVEGDVHVVLKRKYRQ 457
G+ TT G+K+ ++G V ++LK+K Q
Sbjct: 404 GYYSVQTTDGEKIAQLIQGYVDIILKKKRTQ 434
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,014,760
Number of Sequences: 27780
Number of extensions: 248310
Number of successful extensions: 1086
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -