Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0283
         (624 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   4.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   9.8  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   9.8  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +1

Query: 274 TKETDRRTPHYNTGRLRRKNSGGTGNVKGY 363
           TKET  RT  Y    +    +G    +KGY
Sbjct: 296 TKETSTRTDAYTVEIVLEPGTGINVTLKGY 325


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 175 QGAGPRSGPRAPSLPLSPVF 116
           Q    ++ PR P LP+ PV+
Sbjct: 775 QNTNSQAIPRIPILPMIPVY 794


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 129 RGRDGALGPDLGP 167
           RG  GA GP+ GP
Sbjct: 196 RGAIGAYGPEKGP 208


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 573 PQESTHLPQQPILETIGQ 520
           P  S+H+ QQP + T  Q
Sbjct: 443 PSTSSHILQQPSIRTYTQ 460


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,854
Number of Sequences: 438
Number of extensions: 2996
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)