Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0283
         (624 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57370.1 68418.m07168 expressed protein low similarity to nuc...    66   2e-11
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro...    31   0.62 
At3g51350.1 68416.m05622 aspartyl protease family protein contai...    28   4.4  
At1g70820.1 68414.m08169 phosphoglucomutase, putative / glucose ...    28   5.8  
At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plast...    23   6.5  
At3g13210.1 68416.m01653 crooked neck protein, putative / cell c...    27   7.7  
At2g33770.1 68415.m04141 ubiquitin-conjugating enzyme family pro...    27   7.7  
At1g26780.1 68414.m03260 myb family transcription factor (MYB117...    27   7.7  

>At5g57370.1 68418.m07168 expressed protein low similarity to
           nucleic acid binding protein [Homo sapiens] GI:431953
          Length = 219

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
 Frame = +2

Query: 317 DLEGKTPEEQEMLKVMGF-CGFDTTKGKKVDGNVEGDVHVVLKRKYRQYMNRKGGFNRPL 493
           D EG    E EM+K++G   GFD+TKGK V G     +  V KR+ RQYMNR+GGFNRPL
Sbjct: 154 DEEGMDVNEIEMMKMLGIPTGFDSTKGKPVAGADVSGIRAVTKRQPRQYMNRRGGFNRPL 213


>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
           protein contains similarity to SP|Q02917 Early nodulin
           55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
           domain
          Length = 370

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 142 APSDQISVPLPGPAETQPRQTQVSVTAPPP 231
           APSDQ +   P P+ET P    ++  AP P
Sbjct: 313 APSDQSTPLAPSPSETTPTADNITAPAPSP 342


>At3g51350.1 68416.m05622 aspartyl protease family protein contains
           Eukaryotic and viral aspartyl proteases active site,
           PROSITE:PS00141
          Length = 528

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 121 QAREGETAPSDQISVPLPGPAETQPRQTQVSVTA-PPPI 234
           ++ E  T P  ++  P P  +   PR    +V+A PPPI
Sbjct: 456 ESLESTTPPPPEVEAPAPSVSAPPPRSLPPTVSATPPPI 494


>At1g70820.1 68414.m08169 phosphoglucomutase, putative / glucose
           phosphomutase, putative similar to phosphoglucomutase
           GI:534981 from [Spinacia oleracea], phosphomannomutase
           [Pseudomonas aeruginosa] GI:150994; contains InterPro
           accession IPR006352: Phosphoglucosamine mutase
          Length = 615

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +1

Query: 196 RQTQVSV---TAPPPIEFALADTEHLVRETKETDRRTPHYNT 312
           RQT+VS    T P  ++F  A ++HL    KE      HY+T
Sbjct: 219 RQTKVSTLIRTRPQQVDFMSAYSKHLREIIKERINHPEHYDT 260


>At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1,
           plastidic / lipoamide dehydrogenase 1 (PTLPD1) identical
           to plastidic lipoamide dehydrogenase from Arabidopsis
           thaliana [gi:7159282]
          Length = 570

 Score = 23.4 bits (48), Expect(2) = 6.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 284 VSFVSRTRCSVSARANSIGGGA 219
           + F+SR    VSA A+S G GA
Sbjct: 59  IQFLSRKSFQVSASASSNGNGA 80



 Score = 22.6 bits (46), Expect(2) = 6.5
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -2

Query: 233 IGGGAVTETCVCRGCV 186
           I G  V  TCV RGCV
Sbjct: 115 IEGDVVGGTCVNRGCV 130


>At3g13210.1 68416.m01653 crooked neck protein, putative / cell
           cycle protein, putative similar to Swiss-Prot:P17886
           crooked neck protein [Drosophila melanogaster]
          Length = 657

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +1

Query: 193 PRQTQVSVTAPPPIEFALADTEHLVRETKETDRRTPH 303
           PR TQV    P PI+          RE +E + R P+
Sbjct: 24  PRMTQVKNKTPAPIQITAEQILREARERQEAEFRPPN 60


>At2g33770.1 68415.m04141 ubiquitin-conjugating enzyme family
           protein low similarity to ubiquitin-conjugating
           BIR-domain enzyme APOLLON [Homo sapiens] GI:8489831,
           ubiquitin-conjugating enzyme [Mus musculus] GI:3319990;
           contains Pfam profile PF00179: Ubiquitin-conjugating
           enzyme
          Length = 907

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 203 VCRGCVSAGPGSGTEIWSEGAVS 135
           VC   ++   GSGTE+W+ G+ S
Sbjct: 747 VCLSLLNTWSGSGTEVWNAGSSS 769


>At1g26780.1 68414.m03260 myb family transcription factor (MYB117)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 280

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = +2

Query: 398 KVDGNVEGDVHVVLKRKYRQ----YMNRKGGFNRPL 493
           + D +V+   HVV+ RKYR+    Y  RK   N PL
Sbjct: 182 RTDNSVKNHWHVVMARKYREHSSAYRRRKLMSNNPL 217


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,425,161
Number of Sequences: 28952
Number of extensions: 236795
Number of successful extensions: 872
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)