Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0280
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    26   5.2  
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe...    25   6.9  
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    25   9.1  

>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -1

Query: 346 TYSSRNPLSSIITLCHIFTSNLIVTLKSYS 257
           +Y   N +S++++LC  +  +LI  LK Y+
Sbjct: 575 SYVHLNVISAVVSLCDKYDDSLIRLLKEYT 604


>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 22  YSCRFI*SFFFRLWFYRFH*IYKR 93
           Y  RFI SFF + +  R H +Y R
Sbjct: 263 YDLRFIASFFTQFYRLRLHQVYPR 286


>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 594 IEQTGLEHLKFRFSLYSNYLWIC 526
           I Q+GL    FR+ L+ NY+  C
Sbjct: 477 INQSGLSGSVFRYGLFENYVDSC 499


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,421,199
Number of Sequences: 5004
Number of extensions: 46687
Number of successful extensions: 106
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)