Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0280
         (637 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0106 + 702504-702687,702856-703037,703070-703933                 29   2.3  
11_06_0723 - 26688378-26688385,26689351-26689569,26690100-266901...    28   5.4  

>05_01_0106 + 702504-702687,702856-703037,703070-703933
          Length = 409

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 230 LFLTSGFDEGITLKCDN*IRSENVTQSYYTA*WIT*TVC 346
           LF T G D  +TLK D    +E++ + +Y   W+  T+C
Sbjct: 88  LFKTVGIDRIVTLKQDY---NEDLIRQFYATVWVAETIC 123


>11_06_0723 -
           26688378-26688385,26689351-26689569,26690100-26690106,
           26690194-26690256,26690329-26690400,26690507-26691681,
           26692024-26692626,26692643-26692781
          Length = 761

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -2

Query: 192 ASVDFYEADSMFLTSALTLFIHND*YRPKVSLATFIYLMETIKPQSKKK-TLNEPARVR 19
           A V+FY  D  F  S LTL  HN    P  S A  +   + +  Q+K++  LN+ AR+R
Sbjct: 112 AKVNFYLHDEKFCISTLTL-DHNHVVSP--SKARHLRCHKKLDLQAKRRLELNDQARIR 167


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,497,500
Number of Sequences: 37544
Number of extensions: 225816
Number of successful extensions: 373
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)