Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0280
         (637 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66300.1 68414.m07529 F-box family protein contains F-box dom...    31   0.64 
At4g13750.1 68417.m02134 expressed protein                             28   6.0  
At3g18020.1 68416.m02290 pentatricopeptide (PPR) repeat-containi...    28   6.0  

>At1g66300.1 68414.m07529 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 456

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +1

Query: 409 LLCH*NLKLNTQEINYNCVLKSKFTY 486
           L+CH  L L+T+++  NCVL +K+ Y
Sbjct: 38  LICHVLLNLSTKDVIKNCVLSTKWRY 63


>At4g13750.1 68417.m02134 expressed protein
          Length = 2137

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = -2

Query: 279  LSHLRVIPSSKPEVKKSFSCCHTGESKY*ASVDFYEADSMFLTSALTLFIHND*YRPKVS 100
            LS+  VIP      KK F C    + K   +    ++ S+F+  +  LF +     P + 
Sbjct: 1775 LSYRNVIPQYGISSKKEFKCSSLLQDKALYTTPSLDSHSLFMELS-RLFFNG---VPDLH 1830

Query: 99   LATFIYLMETI 67
            LA F++L++T+
Sbjct: 1831 LANFLHLIKTM 1841


>At3g18020.1 68416.m02290 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 688

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = +2

Query: 101 ETLGRYQSLCINNVRADVKNIESAS*KSTDAQYFDSPV*QQLKLFLTSGF 250
           E L     LC+   R D  N+ S      DA  FD    ++  LFL SGF
Sbjct: 73  EALRILDGLCLRGYRPDSLNLSSVIHSLCDAGRFDE-AHRRFLLFLASGF 121


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,965,974
Number of Sequences: 28952
Number of extensions: 216385
Number of successful extensions: 414
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)