Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0279
(717 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 149 2e-36
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 113 2e-25
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 109 2e-24
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 105 4e-23
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 87 2e-17
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 86 3e-17
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 75 4e-14
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 69 5e-12
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 3e-11
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 1e-10
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 63 2e-10
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 63 2e-10
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 61 1e-09
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 59 3e-09
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 58 7e-09
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 58 7e-09
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 58 7e-09
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 57 1e-08
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 57 2e-08
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07) 56 4e-08
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 4e-08
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 54 9e-08
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 2e-07
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 53 2e-07
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 4e-07
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 51 1e-06
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 49 4e-06
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 45 7e-05
SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24) 36 0.033
SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069) 34 0.13
SB_51441| Best HMM Match : DEAD (HMM E-Value=4.9e-19) 33 0.31
SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_6554| Best HMM Match : Isy1 (HMM E-Value=0) 30 2.2
SB_3185| Best HMM Match : Sec63 (HMM E-Value=0) 29 2.8
SB_28817| Best HMM Match : DEAD (HMM E-Value=3.4e-32) 29 3.8
SB_31039| Best HMM Match : Fibrinogen_C (HMM E-Value=4.2e-39) 29 5.0
SB_19782| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07) 28 8.7
SB_19261| Best HMM Match : Keratin_B2 (HMM E-Value=3) 28 8.7
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 149 bits (362), Expect = 2e-36
Identities = 67/159 (42%), Positives = 98/159 (61%)
Frame = +2
Query: 239 PDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 418
P+ + +PFNKNFY+ HP + K+S E+++ R + VSG P F F +
Sbjct: 467 PEKSKIDYKPFNKNFYEEHPEITKQSKQEIDDLRKKMGIKVSGAMPARPCISFAHFGFDE 526
Query: 419 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIR 598
+ ++ + Y +PT IQ Q PIA+SG++++G+A+TGSGKT A++ PA+VHI +QP ++
Sbjct: 527 QMMASIRKLEYTQPTQIQCQALPIALSGRDIIGIAKTGSGKTAAFLWPALVHIMDQPELQ 586
Query: 599 RGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVF 715
GDGPI L+ APTREL QQI A FG + VF
Sbjct: 587 VGDGPIVLICAPTRELCQQIYTEARRFGKAYNIHVVAVF 625
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 113 bits (271), Expect = 2e-25
Identities = 55/130 (42%), Positives = 81/130 (62%), Gaps = 4/130 (3%)
Frame = +2
Query: 335 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 514
+R + ++ G + PI+ ++EA PD + + V +GYK+PTPIQ Q PI + ++++
Sbjct: 83 FREDFNISTKGGRIPFPIRKWKEAQIPDSILEIVDKLGYKDPTPIQRQAIPIGLQNRDII 142
Query: 515 GVAQTGSGKTLAYILPAIVHINNQPPIRRGD----GPIALVLAPTRELAQQIQQVAADFG 682
GVA+TGSGKT A+ +P +V I P I R + GP AL+LAPTRELAQQI++ FG
Sbjct: 143 GVAETGSGKTAAFAIPLLVWIMGLPKIERDNDADQGPYALILAPTRELAQQIEEEILKFG 202
Query: 683 HTSYVRNTCV 712
+R V
Sbjct: 203 RPLGIRTVSV 212
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 109 bits (262), Expect = 2e-24
Identities = 60/135 (44%), Positives = 80/135 (59%)
Frame = +2
Query: 311 RSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 490
R +EV+ YR + ++TV+G V P+ FEE+ FPDY+Q K G+ EPT IQAQ
Sbjct: 57 RGQHEVDAYRRSKDLTVNGRNVPKPVTTFEESAFPDYIQSYFKREGFTEPTMIQAQ---- 112
Query: 491 AMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 670
+ILP IVHIN+QP ++ GDGPI LVL PTRELAQQ+Q+VA
Sbjct: 113 --------------------FILPGIVHINHQPLLQPGDGPIVLVLCPTRELAQQVQEVA 152
Query: 671 ADFGHTSYVRNTCVF 715
G +R+TC++
Sbjct: 153 YSVGKHCKLRSTCIY 167
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 105 bits (252), Expect = 4e-23
Identities = 50/130 (38%), Positives = 77/130 (59%)
Frame = +2
Query: 269 FNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 448
F ++YD + V + S V+E R + + + G + PI+ F + N P + +
Sbjct: 32 FMWSYYDENEKVSRLSDEVVDEIRWKNGIHIEGEDCPKPIESFHDLNLPPELSTYLAKKN 91
Query: 449 YKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVL 628
++ PTPIQ Q MSG++++G+A+TGSGKTLAY LP + + + P GD P+AL+L
Sbjct: 92 FQVPTPIQMQSLSCVMSGRDIIGLAETGSGKTLAYSLPLCMLLRTKAPSNPGDTPVALIL 151
Query: 629 APTRELAQQI 658
PTREL QQ+
Sbjct: 152 TPTRELMQQV 161
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 86.6 bits (205), Expect = 2e-17
Identities = 47/111 (42%), Positives = 62/111 (55%), Gaps = 1/111 (0%)
Frame = +2
Query: 359 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSG 538
VSG I F E F + + + GY+ PTP+Q PI M+G++L+ AQTGSG
Sbjct: 469 VSGENQPPKITSFNELPFGEQLMANISRAGYRRPTPVQKAALPIVMAGRDLMACAQTGSG 528
Query: 539 KTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HT 688
KT AY+LP + + Q P+AL +APTRELA+QI A F HT
Sbjct: 529 KTAAYMLPVLTSLIKQGLNAPPRSPLALCVAPTRELAKQIYIEARKFSDHT 579
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 85.8 bits (203), Expect = 3e-17
Identities = 48/121 (39%), Positives = 66/121 (54%), Gaps = 4/121 (3%)
Frame = +2
Query: 350 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQT 529
EV VSG I FEEAN + V+ YK+PTP+Q PI ++G++++ AQT
Sbjct: 698 EVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVMACAQT 757
Query: 530 GSGKTLAYILPAIVHINN----QPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 697
GSGKT A++LP + + N P A+ +APTRELA QI A F H + +
Sbjct: 758 GSGKTAAFLLPVMTSMMNAGLTSSSFSETQTPQAMCIAPTRELANQIYLEARKFAHGTML 817
Query: 698 R 700
R
Sbjct: 818 R 818
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 75.4 bits (177), Expect = 4e-14
Identities = 40/100 (40%), Positives = 60/100 (60%)
Frame = +2
Query: 386 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPA 565
++ F + G+ G+ PT IQ QG P+A+SG++++G A+TGSGKTLA+++P
Sbjct: 49 VEKFSDFPISKRTLDGLMKAGFVTPTDIQKQGIPVALSGRDVLGAAKTGSGKTLAFLIPI 108
Query: 566 IVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGH 685
I + Q DG ALV++PTRELA Q +V G+
Sbjct: 109 IETLWRQKWTSM-DGLGALVISPTRELAYQTFEVLVKIGN 147
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 68.5 bits (160), Expect = 5e-12
Identities = 31/88 (35%), Positives = 51/88 (57%)
Frame = +2
Query: 284 YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 463
Y HPT+ + +V++ R+ E+ V G V +P+ F +F + + + + GY PT
Sbjct: 161 YKEHPTIAALTAEQVKQLRDKMEIKVKGEHVVSPVLEFFHCSFNESLSKNLSNHGYHSPT 220
Query: 464 PIQAQGWPIAMSGKNLVGVAQTGSGKTL 547
PIQ Q P+ +SG++++ A TGSGK L
Sbjct: 221 PIQMQVLPVLLSGRDVMVCASTGSGKLL 248
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 66.1 bits (154), Expect = 3e-11
Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 1/103 (0%)
Frame = +2
Query: 224 QNMRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFE 400
+ ++ D +V QPF K+FY P + K +P E +E+R + E + V G P++ +
Sbjct: 49 EELQPVDHKTVVYQPFRKDFYVEVPELAKMTPEETDEFRLSLENIHVRGKNAPKPVKTWA 108
Query: 401 EANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQT 529
+ + +K Y++PTPIQAQ P+ MSG++++ + T
Sbjct: 109 QTGVQLKILDVLKKNSYEKPTPIQAQAIPVIMSGRDMIAIVMT 151
Score = 36.7 bits (81), Expect = 0.019
Identities = 21/59 (35%), Positives = 29/59 (49%)
Frame = +2
Query: 539 KTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVF 715
K +Y P + P I G IA+V+ PTRELA QI + F + +R CV+
Sbjct: 121 KKNSYEKPTPIQAQAIPVIMSGRDMIAIVMTPTRELAIQIHRECKKFCKPNNLRCVCVY 179
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 64.1 bits (149), Expect = 1e-10
Identities = 32/83 (38%), Positives = 53/83 (63%)
Frame = +2
Query: 428 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD 607
QG+K MG+ T IQ + + G++L+G A+TGSGKTLA+++P +V + + + +
Sbjct: 585 QGIKDMGFTTMTEIQHKSIAPLLKGRDLLGAAKTGSGKTLAFLVP-VVELLYKLQFKTRN 643
Query: 608 GPIALVLAPTRELAQQIQQVAAD 676
G ++++PTREL+ Q VA D
Sbjct: 644 GTGVIIISPTRELSLQTYGVARD 666
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 63.3 bits (147), Expect = 2e-10
Identities = 32/96 (33%), Positives = 55/96 (57%)
Frame = +2
Query: 395 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 574
FE+ + G+ G+ +P+PIQ + P+A++G++++ A+ G+GKT AY++P +
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLLER 108
Query: 575 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 682
+ + ALVL PTRELA Q Q+ + G
Sbjct: 109 TDTTKNCIQ-----ALVLVPTRELALQTSQICIELG 139
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 63.3 bits (147), Expect = 2e-10
Identities = 32/96 (33%), Positives = 55/96 (57%)
Frame = +2
Query: 395 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 574
FE+ + G+ G+ +P+PIQ + P+A++G++++ A+ G+GKT AY++P +
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLLER 108
Query: 575 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 682
+ + ALVL PTRELA Q Q+ + G
Sbjct: 109 TDTTKNCIQ-----ALVLVPTRELALQTSQICIELG 139
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 60.9 bits (141), Expect = 1e-09
Identities = 31/76 (40%), Positives = 46/76 (60%)
Frame = +2
Query: 428 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD 607
+ V +G+ PTPIQA P+A+ GK++ A TG+GKT A++LP + + +P +
Sbjct: 23 RAVNELGFLHPTPIQASTIPVALMGKDVCACAATGTGKTAAFMLPILERLLYRP--TQSP 80
Query: 608 GPIALVLAPTRELAQQ 655
LV+ PTRELA Q
Sbjct: 81 AIRVLVITPTRELAIQ 96
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 59.3 bits (137), Expect = 3e-09
Identities = 33/72 (45%), Positives = 44/72 (61%)
Frame = +2
Query: 443 MGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIAL 622
MG K+PT IQ P + G++ +G A+TGSGKT A+ LP + + + P G A+
Sbjct: 25 MGIKKPTEIQLNCVPPILQGRDCIGCAKTGSGKTAAFALPILQKLCDDP-----YGIFAV 79
Query: 623 VLAPTRELAQQI 658
VL PTRELA QI
Sbjct: 80 VLTPTRELAFQI 91
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 58.0 bits (134), Expect = 7e-09
Identities = 28/66 (42%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Frame = +2
Query: 464 PIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTR 640
PIQA + G++++G A+TG+GKTL++ LP + + + + +RG P LV+APTR
Sbjct: 98 PIQASTFNYIYDGEDVIGQARTGTGKTLSFALPLVEKLQDGKLSQKRGRAPKVLVMAPTR 157
Query: 641 ELAQQI 658
ELA+Q+
Sbjct: 158 ELAKQV 163
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 58.0 bits (134), Expect = 7e-09
Identities = 37/124 (29%), Positives = 67/124 (54%), Gaps = 6/124 (4%)
Frame = +2
Query: 347 HEVTVSGVEVHNPI---QYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK--NL 511
HEV V + +P+ + FEE +++GV MG+ +P+ IQ P+ ++ N+
Sbjct: 86 HEVEVLRSDPSSPLYSAKSFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLADPPVNM 145
Query: 512 VGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HT 688
+ +Q+G+GKT A++L + ++ P P + L+PT ELA+Q +VA G H
Sbjct: 146 IAQSQSGTGKTAAFVLTMLSRVDATKPY-----PQVICLSPTYELARQTGKVAEAMGKHC 200
Query: 689 SYVR 700
+++
Sbjct: 201 PHIK 204
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 58.0 bits (134), Expect = 7e-09
Identities = 29/65 (44%), Positives = 39/65 (60%)
Frame = +2
Query: 350 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQT 529
EV VSG I FEEAN + V+ YK+PTP+Q PI ++G++++ AQT
Sbjct: 121 EVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVMACAQT 180
Query: 530 GSGKT 544
GSGKT
Sbjct: 181 GSGKT 185
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 57.2 bits (132), Expect = 1e-08
Identities = 26/69 (37%), Positives = 40/69 (57%)
Frame = +2
Query: 386 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPA 565
I FE+ + + + V GYK+PTP+Q PI ++L+ AQTGSGKT A+++P
Sbjct: 874 ILQFEDVDLGEILLHNVGLAGYKKPTPVQKYAIPIVKGKRDLMACAQTGSGKTAAFLIPI 933
Query: 566 IVHINNQPP 592
+ I + P
Sbjct: 934 LSRIYMEGP 942
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 56.8 bits (131), Expect = 2e-08
Identities = 33/93 (35%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Frame = +2
Query: 437 KTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI 616
+T G+++P+ IQ + + G++++ AQ+G+GKT + + + I+ Q +R P
Sbjct: 13 ETEGFEKPSAIQQRAIKPILKGRDVIAQAQSGTGKTATFSISVLQAIDTQ--LRE---PQ 67
Query: 617 ALVLAPTRELAQQIQQVAADFG-HTSYVRNTCV 712
ALVL+PTRELA QIQ+V G + S + C+
Sbjct: 68 ALVLSPTRELANQIQKVVLALGDYMSVQCHACI 100
>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
Length = 456
Score = 55.6 bits (128), Expect = 4e-08
Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 3/112 (2%)
Frame = +2
Query: 350 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQT 529
EV + G P + F +Y + +G PT +Q WP + G+++ GVA
Sbjct: 178 EVLIQGESAPRPFLTMNNSTFYEYGPR----LGVTVPTSLQKHMWPSLLRGRDVAGVAIE 233
Query: 530 GSGKTLAYILPAIVHINNQPPIRR---GDGPIALVLAPTRELAQQIQQVAAD 676
GSGK LAY+LP I I + +GP+ L+L + ++ V D
Sbjct: 234 GSGKRLAYLLPIIHQITESSVYQELPLANGPLVLILCTNWQNTARVYGVCED 285
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 55.6 bits (128), Expect = 4e-08
Identities = 37/98 (37%), Positives = 57/98 (58%), Gaps = 15/98 (15%)
Frame = +2
Query: 413 PDYVQQGVKTMGYKEPTPIQAQGWPIAMS-GKNLVGVAQTGSGKTLAYILPAIVHIN--- 580
PD + + + G+ +PTPIQ+ P A+ ++++G A+TGSGKTLA+ +P I HI
Sbjct: 139 PD-ILRALGDQGFSKPTPIQSLSIPPALLYHRDIIGAAETGSGKTLAFGIPIIQHIEAYK 197
Query: 581 ----NQPPI-------RRGDGPIALVLAPTRELAQQIQ 661
Q P +G +AL++APTRELA Q++
Sbjct: 198 KRKAEQSPSDKESDLESQGYPLLALIMAPTRELALQVK 235
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 54.4 bits (125), Expect = 9e-08
Identities = 37/96 (38%), Positives = 57/96 (59%), Gaps = 1/96 (1%)
Frame = +2
Query: 413 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPP 592
P V++ +K MG +P PIQ + P S K+L+ ++TG+GK+L ++LP++ Q P
Sbjct: 169 PKLVEK-LKKMGITKPVPIQEKALPSVFSHKSLLIKSETGTGKSLVFLLPSV-----QDP 222
Query: 593 IRRGDGPIALVLAPTRELA-QQIQQVAADFGHTSYV 697
RG G I ++ PTRELA Q + +V+ G S V
Sbjct: 223 -GRGYGTI--IVVPTRELASQMLYEVSRLLGDKSIV 255
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 53.6 bits (123), Expect = 2e-07
Identities = 27/76 (35%), Positives = 46/76 (60%)
Frame = +2
Query: 485 PIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQ 664
P+ M GK++V +A+TGSGKT A+++P + G AL+L+PTRELA Q Q+
Sbjct: 313 PLVMDGKDVVAMARTGSGKTAAFLIPMFEKLQTH---TAKVGIRALILSPTRELALQTQK 369
Query: 665 VAADFGHTSYVRNTCV 712
+ G + ++++ +
Sbjct: 370 FIKELGRFTGLKSSVI 385
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 53.2 bits (122), Expect = 2e-07
Identities = 44/145 (30%), Positives = 63/145 (43%), Gaps = 7/145 (4%)
Frame = +2
Query: 290 PHPTVLK-RSPYEVEEYRNNHEVTV-SGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 463
P TV K +E N T S + + F D V + + + +PT
Sbjct: 343 PEATVSKGEKEVTIEAVGQNPAFTPDSDMAFRQRVYSFAGLGLRDDVLKALDALNIHQPT 402
Query: 464 PIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRG-----DGPIALVL 628
IQ P + +++ AQTGSGKTLAY+ P +VH + R G P A ++
Sbjct: 403 VIQMVTIPKIIHRHHVICAAQTGSGKTLAYLAP-LVHRLREDEERHGILARLKRPRACIV 461
Query: 629 APTRELAQQIQQVAADFGHTSYVRN 703
P RELA QI + A H + R+
Sbjct: 462 VPARELATQILKTAKSLCHHARFRS 486
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 52.4 bits (120), Expect = 4e-07
Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Frame = +2
Query: 494 MSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRG-DGPIALVLAPTRELAQQIQQVA 670
+S ++++ AQ+G+GKT + + + I+ + G D ALVLAPTRELAQQIQ+V
Sbjct: 120 LSARDVIAQAQSGTGKTATFAISILQEIDTNYKDKNGCDCCQALVLAPTRELAQQIQKVV 179
Query: 671 ADFGHTSYVR-NTCV 712
G +V+ + C+
Sbjct: 180 LALGDYMHVKCHACI 194
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 50.8 bits (116), Expect = 1e-06
Identities = 25/85 (29%), Positives = 49/85 (57%)
Frame = +2
Query: 428 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD 607
+G+ G+++P+PIQ + P+ G +L+ A++G+GKT + + A+ ++ I +
Sbjct: 26 RGLNEAGFEKPSPIQLKAIPLGRCGLDLIAQAKSGTGKTCVFSVIALENV-----ITESN 80
Query: 608 GPIALVLAPTRELAQQIQQVAADFG 682
++L PTRE+A Q++ V G
Sbjct: 81 CIQIIILTPTREIAVQVKDVICAIG 105
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 48.8 bits (111), Expect = 4e-06
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = +2
Query: 323 EVEEYRNNHEVTVSGVEVHNPIQYF----EEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 490
++ +R+ + V G +V +P++ F E FPDY+ V+ GY PTPIQ Q P+
Sbjct: 137 KINLFRHEQHIYVKGADVPDPVETFSQLIERYGFPDYIIHNVQERGYTTPTPIQMQATPL 196
Query: 491 AMSGKNLVG 517
G G
Sbjct: 197 MAHGPKKSG 205
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +2
Query: 551 YILPAIVHINNQPPIRRG---DGPIALVLAPTRELAQQI 658
Y P + + P + G G A+V++PTRELAQQI
Sbjct: 183 YTTPTPIQMQATPLMAHGPKKSGFRAVVVSPTRELAQQI 221
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 44.8 bits (101), Expect = 7e-05
Identities = 25/60 (41%), Positives = 36/60 (60%)
Frame = +2
Query: 503 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 682
K+++G+A+TGSGKT A+ LP + + + P AL+L PTRELA QI + G
Sbjct: 2 KDVIGLAETGSGKTGAFALPILQALLDNP-----QRLFALILTPTRELAFQISEQCEALG 56
>SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24)
Length = 1366
Score = 35.9 bits (79), Expect = 0.033
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Frame = +2
Query: 275 KNFYDPHPTVLKRSPYEVEEYRNNHEV-TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGY 451
K D + LK E +E+ N + TV+ + P+ E P V + + +G+
Sbjct: 467 KELPDENDENLKEFAPEDDEFLKNLSLDTVAQMAAGIPV----ETETPPEVYKALGQLGF 522
Query: 452 KEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQP 589
Q Q +SG + + V TG+GK+L Y LPA ++ P
Sbjct: 523 SSFRAGQEQAVMRILSGMSSLVVLSTGAGKSLCYQLPAYMYHKRSP 568
>SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069)
Length = 120
Score = 33.9 bits (74), Expect = 0.13
Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +2
Query: 611 PIALVLAPTRELAQQIQQVAADFG-HTSYVRNTCV 712
P ALVL+PTRELA QIQ+V G + S + C+
Sbjct: 4 PQALVLSPTRELANQIQKVVLALGDYMSVQCHACI 38
>SB_51441| Best HMM Match : DEAD (HMM E-Value=4.9e-19)
Length = 304
Score = 32.7 bits (71), Expect = 0.31
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +2
Query: 446 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIV 571
GY + P+Q Q ++ K+ + + TG+GKT+ Y +PA++
Sbjct: 136 GYIDFRPMQRQAIDTLLAEKDSLILLPTGAGKTICYAIPALL 177
>SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 480
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +2
Query: 371 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW 484
++H P++ + FP Y + Y P P QA W
Sbjct: 6 DIHGPVRKLHKHGFPGYEEDYAAVFKYPTPWPEQAMEW 43
>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
Length = 675
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +2
Query: 281 FYDPHPTVLKRSPYEVEEYRNN--HEVTVSGVEVHNPIQYFEEANFPDY 421
+ D VL E EE NN H++ + + +HNP YFE+ + DY
Sbjct: 217 YRDEDDGVLVPIEQEAEEEVNNKLHKILIVNM-IHNPFNYFEKKSPTDY 264
>SB_3185| Best HMM Match : Sec63 (HMM E-Value=0)
Length = 2590
Score = 29.5 bits (63), Expect = 2.8
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Frame = +2
Query: 407 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAM-SGKNLVGVAQTGSGKTLAYILPAI----V 571
+ P Y Q + GY IQ++ A+ S +NL+ A TG+GKT +L +
Sbjct: 1098 SLPMYAQAAFE--GYPTLNRIQSRLCETALNSDENLLLCAPTGAGKTNVALLTILREIGK 1155
Query: 572 HINNQPPIRRGDGPIALVLAPTRELAQQI 658
HIN I + I + +AP R L Q++
Sbjct: 1156 HINLDGTINTEEFKI-IYVAPMRSLVQEM 1183
>SB_28817| Best HMM Match : DEAD (HMM E-Value=3.4e-32)
Length = 651
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 494 MSGKNLVGVAQTGSGKTLAYILPAIV 571
MSG + + + TG GK+L + LPA+V
Sbjct: 102 MSGVDCILIMPTGGGKSLCFQLPAVV 127
>SB_31039| Best HMM Match : Fibrinogen_C (HMM E-Value=4.2e-39)
Length = 411
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -2
Query: 266 VGVKQNPNLGDACSDLQRILFSHQ--ILQILQIYCH 165
+GVKQ P L +CS++Q F+H I I CH
Sbjct: 269 IGVKQQPPLLPSCSEIQSEHFAHTSGIFPIALTPCH 304
>SB_19782| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 728
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -2
Query: 230 CSDLQRILFSHQILQILQIYCHRC-QIETN 144
CS +L +IL+ +YC +C Q ETN
Sbjct: 14 CSLCSEVLTEPKILRCFHVYCQKCLQAETN 43
>SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07)
Length = 401
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -2
Query: 161 CQIETNYRRICCLLQIWN-HRFHGYYSS 81
C + +YRR CC L +W H + Y+SS
Sbjct: 218 CCVRVDYRRKCC-LHVWRVHTTNTYWSS 244
>SB_19261| Best HMM Match : Keratin_B2 (HMM E-Value=3)
Length = 333
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/55 (30%), Positives = 22/55 (40%)
Frame = +2
Query: 446 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDG 610
G+ P+ Q S V A T T AY+ P +V PP+R G G
Sbjct: 231 GFSPTGPVNGQPTNSTSSSPFSVTSADTIINPTAAYVRPGMVPREIIPPLRDGSG 285
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,126,239
Number of Sequences: 59808
Number of extensions: 436732
Number of successful extensions: 1187
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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