Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0279
(717 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 199 1e-51
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 180 6e-46
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 180 6e-46
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 145 3e-35
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 140 1e-33
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 139 1e-33
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 134 7e-32
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 134 7e-32
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 134 7e-32
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 126 2e-29
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 109 2e-24
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 103 9e-23
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 102 3e-22
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 95 4e-20
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 95 4e-20
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 87 1e-17
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 84 1e-16
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 80 2e-15
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 78 5e-15
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 78 5e-15
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 77 1e-14
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 77 2e-14
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 76 3e-14
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 74 1e-13
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 74 1e-13
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 71 6e-13
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 69 4e-12
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 68 5e-12
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 68 5e-12
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 67 9e-12
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 64 7e-11
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 64 9e-11
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 64 1e-10
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 64 1e-10
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 63 2e-10
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 63 2e-10
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 62 3e-10
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 62 4e-10
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 61 8e-10
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 61 8e-10
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 60 1e-09
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 60 1e-09
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 60 1e-09
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 59 3e-09
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 59 3e-09
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 57 1e-08
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 57 1e-08
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 56 2e-08
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 56 3e-08
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 55 4e-08
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 54 9e-08
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 52 3e-07
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 52 5e-07
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 51 9e-07
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 49 3e-06
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 48 5e-06
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 48 5e-06
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 48 6e-06
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 47 1e-05
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 45 6e-05
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 43 2e-04
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 43 2e-04
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 43 2e-04
At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative severa... 36 0.035
At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA ... 31 0.76
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 31 1.0
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 30 1.3
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si... 29 2.3
At5g03940.1 68418.m00374 signal recognition particle 54 kDa prot... 29 4.1
At3g04670.1 68416.m00500 WRKY family transcription factor simila... 28 5.4
At5g22960.1 68418.m02684 serine carboxypeptidase S10 family prot... 28 7.1
At3g58430.1 68416.m06512 meprin and TRAF homology domain-contain... 28 7.1
At3g56190.1 68416.m06245 alpha-soluble NSF attachment protein 2 ... 28 7.1
At5g52530.2 68418.m06518 dentin sialophosphoprotein-related cont... 27 9.4
At5g52530.1 68418.m06517 dentin sialophosphoprotein-related cont... 27 9.4
At5g48950.2 68418.m06055 thioesterase family protein contains Pf... 27 9.4
At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1) ide... 27 9.4
At2g25460.1 68415.m03049 expressed protein 27 9.4
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 27 9.4
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 27 9.4
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 27 9.4
At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly ... 27 9.4
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 199 bits (486), Expect = 1e-51
Identities = 90/164 (54%), Positives = 119/164 (72%)
Frame = +2
Query: 224 QNMRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEE 403
++ R+ D D L PF KNFY P V + EVEEYR E+TV G ++ P++ F +
Sbjct: 46 ESPRKLDLDG--LTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRD 103
Query: 404 ANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINN 583
FPDYV + VK G+ EPTPIQ+QGWP+AM G++L+G+A+TGSGKTL+Y+LPAIVH+N
Sbjct: 104 VGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNA 163
Query: 584 QPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVF 715
QP + GDGPI LVLAPTRELA QIQQ A+ FG +S ++ TC++
Sbjct: 164 QPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIY 207
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 180 bits (439), Expect = 6e-46
Identities = 78/153 (50%), Positives = 113/153 (73%)
Frame = +2
Query: 257 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 436
+L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD + + +
Sbjct: 121 NLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAI 180
Query: 437 KTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI 616
+G+ EPTPIQAQGWP+A+ G++L+G+A+TGSGKTLAY+LPA+VH++ QP + + DGPI
Sbjct: 181 AKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPI 240
Query: 617 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVF 715
L+LAPTRELA QIQ+ + FG S VR+TC++
Sbjct: 241 VLILAPTRELAVQIQEESRKFGLRSGVRSTCIY 273
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 180 bits (439), Expect = 6e-46
Identities = 78/153 (50%), Positives = 113/153 (73%)
Frame = +2
Query: 257 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 436
+L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD + + +
Sbjct: 121 NLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAI 180
Query: 437 KTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI 616
+G+ EPTPIQAQGWP+A+ G++L+G+A+TGSGKTLAY+LPA+VH++ QP + + DGPI
Sbjct: 181 AKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPI 240
Query: 617 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVF 715
L+LAPTRELA QIQ+ + FG S VR+TC++
Sbjct: 241 VLILAPTRELAVQIQEESRKFGLRSGVRSTCIY 273
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 145 bits (351), Expect = 3e-35
Identities = 64/158 (40%), Positives = 99/158 (62%)
Frame = +2
Query: 242 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDY 421
D S+ +P NK+FY+ ++ + E +YR + VSG +VH P++ FE+ F
Sbjct: 179 DHSSIDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQ 238
Query: 422 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRR 601
+ +K Y++PT IQ Q PI +SG++++G+A+TGSGKT A++LP IVHI +QP ++R
Sbjct: 239 IMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQR 298
Query: 602 GDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVF 715
+GPI ++ APTRELA QI A F +R + V+
Sbjct: 299 DEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVY 336
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 140 bits (338), Expect = 1e-33
Identities = 65/158 (41%), Positives = 93/158 (58%)
Frame = +2
Query: 242 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDY 421
D + +PF KNFY + + + EV YR E+ V G +V PI+++ +
Sbjct: 480 DHSKIEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSK 539
Query: 422 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRR 601
+ +K + Y++P PIQ Q PI MSG++ +GVA+TGSGKTL ++LP + HI +QPP+
Sbjct: 540 ILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEA 599
Query: 602 GDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVF 715
GDGPI LV+APTREL QQI F +R V+
Sbjct: 600 GDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVY 637
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 139 bits (337), Expect = 1e-33
Identities = 63/139 (45%), Positives = 88/139 (63%)
Frame = +2
Query: 242 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDY 421
D + +PF KNFY + + + V YR E+ V G +V PIQ++ +
Sbjct: 347 DHSKIEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSK 406
Query: 422 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRR 601
+ +K + Y++P PIQAQ PI MSG++ +GVA+TGSGKTL ++LP + HI +QPP+
Sbjct: 407 ILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEA 466
Query: 602 GDGPIALVLAPTRELAQQI 658
GDGPI LV+APTREL QQI
Sbjct: 467 GDGPIGLVMAPTRELVQQI 485
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 134 bits (323), Expect = 7e-32
Identities = 65/142 (45%), Positives = 88/142 (61%)
Frame = +2
Query: 290 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 469
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 470 QAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 649
QAQ WPIAM G+++V +A+TGSGKTL Y++P +H+ R GP LVL+PTRELA
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELA 243
Query: 650 QQIQQVAADFGHTSYVRNTCVF 715
QIQ+ A FG +S + TC++
Sbjct: 244 TQIQEEAVKFGRSSRISCTCLY 265
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 134 bits (323), Expect = 7e-32
Identities = 65/142 (45%), Positives = 88/142 (61%)
Frame = +2
Query: 290 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 469
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 470 QAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 649
QAQ WPIAM G+++V +A+TGSGKTL Y++P +H+ R GP LVL+PTRELA
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELA 243
Query: 650 QQIQQVAADFGHTSYVRNTCVF 715
QIQ+ A FG +S + TC++
Sbjct: 244 TQIQEEAVKFGRSSRISCTCLY 265
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 134 bits (323), Expect = 7e-32
Identities = 65/142 (45%), Positives = 88/142 (61%)
Frame = +2
Query: 290 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 469
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 470 QAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 649
QAQ WPIAM G+++V +A+TGSGKTL Y++P +H+ R GP LVL+PTRELA
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELA 243
Query: 650 QQIQQVAADFGHTSYVRNTCVF 715
QIQ+ A FG +S + TC++
Sbjct: 244 TQIQEEAVKFGRSSRISCTCLY 265
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 126 bits (303), Expect = 2e-29
Identities = 65/152 (42%), Positives = 92/152 (60%), Gaps = 4/152 (2%)
Frame = +2
Query: 272 NKNFYDPH----PTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 439
NK+ PH P V SP E+ YR HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 440 TMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 619
+ G+ PTPIQAQ WPIA+ +++V +A+TGSGKTL Y++PA + + + R +GP
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSR-NGPTV 510
Query: 620 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVF 715
L+LAPTRELA QIQ A FG +S + TC++
Sbjct: 511 LILAPTRELATQIQDEALRFGRSSRISCTCLY 542
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 109 bits (262), Expect = 2e-24
Identities = 54/136 (39%), Positives = 83/136 (61%), Gaps = 3/136 (2%)
Frame = +2
Query: 281 FYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 460
++ P V K S +++ R +TV+G ++ PI+ F + FP + + +K G P
Sbjct: 61 WWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHP 120
Query: 461 TPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLA 631
TPIQ QG P+ +SG++++G+A TGSGKTL ++LP I+ + PI G+GPIALV+
Sbjct: 121 TPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVIC 180
Query: 632 PTRELAQQIQQVAADF 679
P+RELA+Q V F
Sbjct: 181 PSRELAKQTYDVVEQF 196
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 103 bits (248), Expect = 9e-23
Identities = 46/129 (35%), Positives = 80/129 (62%), Gaps = 3/129 (2%)
Frame = +2
Query: 335 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 514
+R + ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ + ++++
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVI 354
Query: 515 GVAQTGSGKTLAYILPAIVHINNQPPI---RRGDGPIALVLAPTRELAQQIQQVAADFGH 685
G+A+TGSGKT A++LP + +I+ PP+ +GP A+V+APTRELAQQI++ F H
Sbjct: 355 GIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAH 414
Query: 686 TSYVRNTCV 712
R T +
Sbjct: 415 YLGFRVTSI 423
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 102 bits (244), Expect = 3e-22
Identities = 50/135 (37%), Positives = 81/135 (60%), Gaps = 3/135 (2%)
Frame = +2
Query: 284 YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 463
+ P + K S + + R + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 464 PIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAP 634
PIQ QG P+ ++G++++G+A TGSGKTL ++LP I+ + PI G+GPI L++ P
Sbjct: 171 PIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCP 230
Query: 635 TRELAQQIQQVAADF 679
+RELA+Q +V F
Sbjct: 231 SRELARQTYEVVEQF 245
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 95.1 bits (226), Expect = 4e-20
Identities = 45/94 (47%), Positives = 62/94 (65%)
Frame = +2
Query: 434 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGP 613
V + G+ P+PIQAQ WPIAM +++V +A+TGSGKTL Y++P +H+ R GP
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSR-MGP 302
Query: 614 IALVLAPTRELAQQIQQVAADFGHTSYVRNTCVF 715
LVL+PTRELA QIQ A FG +S + C++
Sbjct: 303 TILVLSPTRELATQIQVEALKFGKSSKISCACLY 336
Score = 31.1 bits (67), Expect = 0.76
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 329 EEYRNNHEVTVSGVEVHNPIQYFEEANFPD 418
E Y HE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 95.1 bits (226), Expect = 4e-20
Identities = 54/137 (39%), Positives = 81/137 (59%), Gaps = 6/137 (4%)
Frame = +2
Query: 323 EVEEYRNNHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 496
E E + VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 497 SGKNLVGVAQTGSGKTLAYILPAIVHI-NNQPPIRRGD---GPIALVLAPTRELAQQIQQ 664
G++L+G+A+TGSGKTLA+ +PAI+H+ I G P LVL+PTRELA QI
Sbjct: 150 DGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISD 209
Query: 665 VAADFGHTSYVRNTCVF 715
V + G +++ CV+
Sbjct: 210 VLREAGEPCGLKSICVY 226
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 87.0 bits (206), Expect = 1e-17
Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 8/166 (4%)
Frame = +2
Query: 227 NMRRPDWD--SVSLQPFNKNFYDPHPTVLKRSPYEVE-EYRNNHEVTVSGVEVHNPIQYF 397
N R WD + PF + +P P ++ + + + + SG V P+ F
Sbjct: 102 NNRSGGWDRREREVNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTF 161
Query: 398 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI 577
E + + + ++ Y +PTP+Q PI + G++L+ AQTGSGKT A+ P I I
Sbjct: 162 AEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGI 221
Query: 578 NNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHTSYVR 700
++R G P+A++L+PTRELA QI A F + + V+
Sbjct: 222 MKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVK 267
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 83.8 bits (198), Expect = 1e-16
Identities = 55/166 (33%), Positives = 79/166 (47%), Gaps = 8/166 (4%)
Frame = +2
Query: 227 NMRRPDWD--SVSLQPF-NKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYF 397
N R WD PF N DP + + E Y + + SG V P+ F
Sbjct: 90 NARSGGWDRRDTETNPFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTF 148
Query: 398 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI 577
E + + + ++ Y +PTP+Q PI +G++L+ AQTGSGKT A+ P I I
Sbjct: 149 AEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGI 208
Query: 578 NNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHTSYVR 700
I R G P+A++L+PTRELA QI A F + + V+
Sbjct: 209 MKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGVK 254
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 79.8 bits (188), Expect = 2e-15
Identities = 45/128 (35%), Positives = 70/128 (54%), Gaps = 5/128 (3%)
Frame = +2
Query: 314 SPYEVEEYRNNHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 487
S ++ + R ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 488 IAMSGKNLVGVAQTGSGKTLAYILPAI---VHINNQPPIRRGDGPIALVLAPTRELAQQI 658
A++GK+L+ A TGSGKT ++++P I +++ P + P+A+VLAPTREL Q+
Sbjct: 143 AALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQV 202
Query: 659 QQVAADFG 682
+ A G
Sbjct: 203 EDQAKMLG 210
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 78.2 bits (184), Expect = 5e-15
Identities = 52/166 (31%), Positives = 80/166 (48%), Gaps = 8/166 (4%)
Frame = +2
Query: 227 NMRRPDWD--SVSLQPFNKNF-YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYF 397
N R WD + PF + +P T + + + Y + V SG +V P+ F
Sbjct: 95 NNRSGGWDRREREVNPFGDDAELEPVFTEQENTGINFDAYEDI-PVETSGGDVPPPVNTF 153
Query: 398 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI 577
+ + D + ++ Y PTP+Q PI ++ ++L+ AQTGSGKT A+ P I I
Sbjct: 154 ADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGI 213
Query: 578 NNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHTSYVR 700
+ R G P A++L+PTRELA QI A F + + V+
Sbjct: 214 MKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVK 259
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 78.2 bits (184), Expect = 5e-15
Identities = 52/166 (31%), Positives = 80/166 (48%), Gaps = 8/166 (4%)
Frame = +2
Query: 227 NMRRPDWD--SVSLQPFNKNF-YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYF 397
N R WD + PF + +P T + + + Y + V SG +V P+ F
Sbjct: 95 NNRSGGWDRREREVNPFGDDAELEPVFTEQENTGINFDAYEDI-PVETSGGDVPPPVNTF 153
Query: 398 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI 577
+ + D + ++ Y PTP+Q PI ++ ++L+ AQTGSGKT A+ P I I
Sbjct: 154 ADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGI 213
Query: 578 NNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHTSYVR 700
+ R G P A++L+PTRELA QI A F + + V+
Sbjct: 214 MKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVK 259
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 77.0 bits (181), Expect = 1e-14
Identities = 40/102 (39%), Positives = 62/102 (60%)
Frame = +2
Query: 395 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 574
FE N V +K GYK PTPIQ + P+ +SG ++V +A+TGSGKT A+++P +
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89
Query: 575 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 700
+ P +G G AL+L+PTR+LA+Q + + G + +R
Sbjct: 90 LKQHVP--QG-GVRALILSPTRDLAEQTLKFTKELGKFTDLR 128
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 76.6 bits (180), Expect = 2e-14
Identities = 44/104 (42%), Positives = 61/104 (58%)
Frame = +2
Query: 356 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGS 535
TV GV H F E N + + +T+GYK+PTPIQA P+A++G++L A TGS
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGS 215
Query: 536 GKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 667
GKT A+ LP + + +P +R L+L PTRELA QI +
Sbjct: 216 GKTAAFALPTLERLLFRP--KRVFATRVLILTPTRELAVQIHSM 257
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 75.8 bits (178), Expect = 3e-14
Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 4/110 (3%)
Frame = +2
Query: 338 RNNHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 505
R + + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Query: 506 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 655
A TGSGKT A+I P ++ + DG A++L+P RELA Q
Sbjct: 180 ECFACAPTGSGKTFAFICPMLIKLKRPST----DGIRAVILSPARELAAQ 225
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 73.7 bits (173), Expect = 1e-13
Identities = 42/113 (37%), Positives = 63/113 (55%), Gaps = 1/113 (0%)
Frame = +2
Query: 323 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 502
EVEE RN+ E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 503 KNLVGVAQTGSGKTLAYILPAIVHINNQPPI-RRGDGPIALVLAPTRELAQQI 658
K++V A+TGSGKTLAY+LP + + + + ++ P A +L P+REL QQ+
Sbjct: 84 KDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQV 136
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 73.7 bits (173), Expect = 1e-13
Identities = 34/82 (41%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Frame = +2
Query: 443 MGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIA 619
MG++ PT +QAQ P+ +SG++++ A TG+GKT+AY+ P I H+ + P + R G A
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFA 107
Query: 620 LVLAPTRELAQQIQQVAADFGH 685
LV+ PTREL Q+ + H
Sbjct: 108 LVIVPTRELCLQVYETLEKLLH 129
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 71.3 bits (167), Expect = 6e-13
Identities = 45/138 (32%), Positives = 70/138 (50%)
Frame = +2
Query: 263 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 442
+P K T K EVE+ ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 443 MGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIAL 622
MG+ T IQA+ P M G++++G A+TGSGKTLA+++PA V + + +G L
Sbjct: 172 MGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPA-VELLYRVKFTPRNGTGVL 230
Query: 623 VLAPTRELAQQIQQVAAD 676
V+ PTRELA Q VA +
Sbjct: 231 VICPTRELAIQSYGVAKE 248
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 68.5 bits (160), Expect = 4e-12
Identities = 38/105 (36%), Positives = 63/105 (60%), Gaps = 7/105 (6%)
Frame = +2
Query: 371 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLA 550
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK+++G+AQTGSGKT A
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGA 62
Query: 551 YILPAIVHI-----NNQPPIRRGDGP--IALVLAPTRELAQQIQQ 664
+ +P + + +++P R P A VL+PTRELA QI +
Sbjct: 63 FAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAE 107
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 68.1 bits (159), Expect = 5e-12
Identities = 45/112 (40%), Positives = 62/112 (55%), Gaps = 5/112 (4%)
Frame = +2
Query: 359 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSG 538
V VEV NP + +++ +K G + PIQA + + + G +LVG A+TG G
Sbjct: 87 VEDVEVDNP-NAVSKFRISAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQG 145
Query: 539 KTLAYILPAIVHINNQPPIRR-----GDGPIALVLAPTRELAQQIQQVAADF 679
KTLA++LP + + N P + G P LVL PTRELA +QVAADF
Sbjct: 146 KTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELA---KQVAADF 194
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 68.1 bits (159), Expect = 5e-12
Identities = 36/90 (40%), Positives = 56/90 (62%)
Frame = +2
Query: 395 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 574
FE ++ + K +G ++PTP+Q P ++G++++G+AQTGSGKT A+ LP I+H
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALP-ILH 118
Query: 575 INNQPPIRRGDGPIALVLAPTRELAQQIQQ 664
+ P G ALV+ PTRELA Q+ +
Sbjct: 119 RLAEDPY----GVFALVVTPTRELAFQLAE 144
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 67.3 bits (157), Expect = 9e-12
Identities = 40/114 (35%), Positives = 61/114 (53%), Gaps = 5/114 (4%)
Frame = +2
Query: 386 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPA 565
++ F+E + V ++ + + PT IQ G P M K++V + TGSGKTLAY+LP
Sbjct: 111 VENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLP- 169
Query: 566 IVHINNQPPIRRGD-----GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCV 712
IV + + G P +VL PTREL++Q+ +VA H + R+ V
Sbjct: 170 IVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILV 223
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 64.5 bits (150), Expect = 7e-11
Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
Frame = +2
Query: 326 VEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 505
+E+ + + + G + + F+ + + +K MG++ T IQA + GK
Sbjct: 69 MEDGEDEKNIVIVGKGIMTNVT-FDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGK 127
Query: 506 NLVGVAQTGSGKTLAYILPAI-VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 676
+++G A+TGSGKTLA+++PA+ + + R G G +V+ PTRELA Q + VA +
Sbjct: 128 DVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTG--VIVICPTRELAIQTKNVAEE 183
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 64.1 bits (149), Expect = 9e-11
Identities = 30/90 (33%), Positives = 56/90 (62%)
Frame = +2
Query: 386 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPA 565
++ F + D ++G+K Y + T +Q+ P A+ G++++G A+TGSGKTLA+++P
Sbjct: 70 VRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPI 129
Query: 566 IVHINNQPPIRRGDGPIALVLAPTRELAQQ 655
+ ++ + DG ++++PTRELA Q
Sbjct: 130 LEKLHRE-RWSPEDGVGCIIISPTRELAAQ 158
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 63.7 bits (148), Expect = 1e-10
Identities = 31/96 (32%), Positives = 56/96 (58%)
Frame = +2
Query: 395 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 574
FE+ + G+ G++ P+PIQ + PIA++G++++ A+ G+GKT A+ +P +
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 575 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 682
I+ + + A+++ PTRELA Q QV + G
Sbjct: 193 IDQDNNVIQ-----AVIIVPTRELALQTSQVCKELG 223
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 63.7 bits (148), Expect = 1e-10
Identities = 31/96 (32%), Positives = 56/96 (58%)
Frame = +2
Query: 395 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 574
FE+ + G+ G++ P+PIQ + PIA++G++++ A+ G+GKT A+ +P +
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 575 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 682
I+ + + A+++ PTRELA Q QV + G
Sbjct: 193 IDQDNNVIQ-----AVIIVPTRELALQTSQVCKELG 223
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 63.3 bits (147), Expect = 2e-10
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Frame = +2
Query: 428 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD 607
+ +K G++ T +Q PI + GK+++ A+TG+GKT+A++LPAI + PP R
Sbjct: 395 KAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDS 454
Query: 608 GP---IALVLAPTRELAQQ 655
I LV+ PTRELA Q
Sbjct: 455 RQPPIIVLVVCPTRELASQ 473
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 62.9 bits (146), Expect = 2e-10
Identities = 32/90 (35%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
Frame = +2
Query: 395 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 574
F++ +G++ G+K T +Q P+ + GK+++ A+TG+GKT+A++LP+I
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEA 141
Query: 575 INNQPPIRRGDGP---IALVLAPTRELAQQ 655
+ PP R + I LV+ PTRELA Q
Sbjct: 142 VIKAPPASRDNRHPPIIVLVVCPTRELACQ 171
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 62.5 bits (145), Expect = 3e-10
Identities = 33/79 (41%), Positives = 50/79 (63%), Gaps = 3/79 (3%)
Frame = +2
Query: 428 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD 607
+ +K GY+ T +Q PI + GK+++ A+TG+GKT+A++LP+I + PP +
Sbjct: 67 KAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDN 126
Query: 608 --GPI-ALVLAPTRELAQQ 655
PI ALV+ PTRELA Q
Sbjct: 127 KRPPILALVICPTRELANQ 145
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 62.1 bits (144), Expect = 4e-10
Identities = 33/82 (40%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Frame = +2
Query: 422 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH-INNQPPIR 598
+ + + + G ++ PIQ AM G++++G A+TG+GKTLA+ +P I I
Sbjct: 115 IVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHG 174
Query: 599 RGDGPIALVLAPTRELAQQIQQ 664
RG P+ LVLAPTRELA+Q+++
Sbjct: 175 RGRNPLCLVLAPTRELARQVEK 196
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 60.9 bits (141), Expect = 8e-10
Identities = 34/82 (41%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Frame = +2
Query: 422 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH-INNQPPIR 598
+ + +K G ++ PIQ AM G++++G A+TG+GKTLA+ +P I I
Sbjct: 127 IVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHG 186
Query: 599 RGDGPIALVLAPTRELAQQIQQ 664
RG P LVLAPTRELA+Q+++
Sbjct: 187 RGKNPQCLVLAPTRELARQVEK 208
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 60.9 bits (141), Expect = 8e-10
Identities = 36/84 (42%), Positives = 53/84 (63%), Gaps = 3/84 (3%)
Frame = +2
Query: 446 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPI 616
G++ TP+QA+ P S K++V A TGSGKTLA++LP I I N+ PP + +
Sbjct: 35 GFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVM 92
Query: 617 ALVLAPTRELAQQIQQVAADFGHT 688
++++PTREL+ QI +VA F T
Sbjct: 93 GVIISPTRELSAQIHKVAEPFVST 116
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 60.5 bits (140), Expect = 1e-09
Identities = 31/94 (32%), Positives = 57/94 (60%)
Frame = +2
Query: 395 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 574
FE+ + +G+ G+++P+PIQ + PIA++G +++ A+ G+GKT A+ +P +
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEK 215
Query: 575 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 676
I+ + + + A++L PTRELA Q QV +
Sbjct: 216 IDPENNVIQ-----AVILVPTRELALQTSQVCKE 244
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 60.1 bits (139), Expect = 1e-09
Identities = 31/94 (32%), Positives = 56/94 (59%)
Frame = +2
Query: 395 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 574
FE+ + +G+ G+++P+PIQ + PIA++G +++ A+ G+GKT A+ +P +
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 575 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 676
I+ + + A++L PTRELA Q QV +
Sbjct: 186 IDPNNNVIQ-----AMILVPTRELALQTSQVCKE 214
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 60.1 bits (139), Expect = 1e-09
Identities = 31/94 (32%), Positives = 56/94 (59%)
Frame = +2
Query: 395 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 574
FE+ + +G+ G+++P+PIQ + PIA++G +++ A+ G+GKT A+ +P +
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 575 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 676
I+ + + A++L PTRELA Q QV +
Sbjct: 186 IDPNNNVIQ-----AMILVPTRELALQTSQVCKE 214
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 59.3 bits (137), Expect = 3e-09
Identities = 37/113 (32%), Positives = 64/113 (56%), Gaps = 3/113 (2%)
Frame = +2
Query: 383 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT--LAYI 556
PI+ F++ D V +GV GYK+P+ IQ + + G++++ AQ+G+GKT +A
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAIS 79
Query: 557 LPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HTSYVRNTCV 712
+ IV+I+++ LVL+P+RELA Q ++ G HT+ + C+
Sbjct: 80 VCQIVNISSRK-------VQVLVLSPSRELASQTEKTIQAIGAHTNIQAHACI 125
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 58.8 bits (136), Expect = 3e-09
Identities = 34/78 (43%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Frame = +2
Query: 446 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPI 616
G++ TP+QA+ P S K++V A TGSGKTLA++LP I I N+ PP + +
Sbjct: 36 GFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVM 93
Query: 617 ALVLAPTRELAQQIQQVA 670
++++PTREL+ QI +VA
Sbjct: 94 GVIISPTRELSAQIHKVA 111
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 56.8 bits (131), Expect = 1e-08
Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 5/108 (4%)
Frame = +2
Query: 407 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQ 586
+ P +++ ++ G PIQ A+ G++++ A+TG+GKTLA+ +P I + +
Sbjct: 108 SLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEE 167
Query: 587 ----PPIRR-GDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVF 715
RR G P LVLAPTRELA+Q+++ + Y+ CV+
Sbjct: 168 AGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKE--SAPYLSTVCVY 213
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 56.8 bits (131), Expect = 1e-08
Identities = 31/86 (36%), Positives = 49/86 (56%)
Frame = +2
Query: 413 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPP 592
P+++ ++ +G+ PT IQ + P +G++ + AQTGSGKTL Y+L IN Q
Sbjct: 84 PEHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQ-- 141
Query: 593 IRRGDGPIALVLAPTRELAQQIQQVA 670
A+++ PTREL Q+ +VA
Sbjct: 142 ---RSSVQAVIVVPTRELGMQVTKVA 164
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 56.4 bits (130), Expect = 2e-08
Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Frame = +2
Query: 476 QGWPIAMSGKNLVGVAQTGSGKTLAYILPAI---VHINNQPPIRRGDGPIALVLAPTREL 646
Q P A++GK+L+ A TGSGKT ++++P I +++ P + P+A+VLAPTREL
Sbjct: 2 QAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTREL 61
Query: 647 AQQIQQVAADFG 682
Q++ A G
Sbjct: 62 CVQVEDQAKMLG 73
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 55.6 bits (128), Expect = 3e-08
Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Frame = +2
Query: 341 NNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT-MGYKEPTPIQAQGWPIAMSG--KNL 511
+N + SG + FE+ N + +G+ M +++P+ IQA P+ M+ K+L
Sbjct: 75 SNIKAVTSGDTPYTSASRFEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMTPPHKHL 134
Query: 512 VGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 682
+ A GSGKT ++L + ++ P +R P AL + PTRELA Q +V G
Sbjct: 135 IAQAHNGSGKTTCFVLGMLSRVD--PTLRE---PQALCICPTRELANQNMEVLQKMG 186
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 55.2 bits (127), Expect = 4e-08
Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Frame = +2
Query: 395 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 574
FEE PD + ++ G+ PT +Q+ P + G + V + TGSGKTLAY+LP +
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSE 171
Query: 575 INNQPPIRRGDGP--------IALVLAPTRELAQQI 658
I R A+++AP+REL QI
Sbjct: 172 IGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQI 207
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 54.0 bits (124), Expect = 9e-08
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Frame = +2
Query: 395 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 574
F E + + + +K + P IQA + + GK+ + Q+GSGKTLAY++P I
Sbjct: 376 FAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQR 435
Query: 575 INN---QPPIRRGDG-PIALVLAPTRELAQQI 658
+ Q + G P +VL PT ELA Q+
Sbjct: 436 LREEELQGHSKSSPGCPRVIVLVPTAELASQV 467
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 52.4 bits (120), Expect = 3e-07
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Frame = +2
Query: 356 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGS 535
T G+E PI F + + V +GV G+++P+ IQ + + G++++ AQ+G+
Sbjct: 27 TTDGIE---PITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGT 83
Query: 536 GKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HTSYVRNTCV 712
GKT L ++ + AL+L+PTRELA Q ++ G H + + C+
Sbjct: 84 GKTSMIALSVCQVVDTSSREVQ-----ALILSPTRELATQTEKTIQAIGLHANIQAHACI 138
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 51.6 bits (118), Expect = 5e-07
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Frame = +2
Query: 461 TPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQ---PPIRRGDGPIALVLA 631
TP+QA P+ S K++ A TGSGKTLA+++P + + PP + + ++++
Sbjct: 40 TPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPP--KPHQVMGVIIS 97
Query: 632 PTRELAQQIQQVAADFGHT 688
PTREL+ QI VA F T
Sbjct: 98 PTRELSTQIYNVAQPFVST 116
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 50.8 bits (116), Expect = 9e-07
Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
Frame = +2
Query: 371 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLA 550
EVH + F+ + + +G+ G+++P+ IQ +G G +++ AQ+G+GKT
Sbjct: 36 EVH---ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTAT 92
Query: 551 YILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR-NTCV 712
+ + ++ + ALVLAPTRELAQQI++V G V+ + CV
Sbjct: 93 FCSGVLQQLDYALLQCQ-----ALVLAPTRELAQQIEKVMRALGDYQGVKVHACV 142
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 49.2 bits (112), Expect = 3e-06
Identities = 33/107 (30%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Frame = +2
Query: 395 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 574
F+ + + +G+ G+++P+ IQ +G G +++ AQ+G+GKT + +
Sbjct: 41 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQ 100
Query: 575 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR-NTCV 712
++ + ALVLAPTRELAQQI++V G V+ + CV
Sbjct: 101 LDFSLIQCQ-----ALVLAPTRELAQQIEKVMRALGDYLGVKVHACV 142
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 48.4 bits (110), Expect = 5e-06
Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 16/97 (16%)
Frame = +2
Query: 422 VQQGVKTMGYKEPTPIQAQGWPIAM-SGKNLVGVAQTGSGKTLAYILPAIVHI------- 577
+ + + + +KEPT IQ + +A GK+++G A+TGSGKTLA+ LP + +
Sbjct: 201 LMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKV 260
Query: 578 -------NNQPPIRRGDGPI-ALVLAPTRELAQQIQQ 664
+ DG + AL++ PTRELA Q+ +
Sbjct: 261 GKLYALKGEEAQKYAADGYLRALIITPTRELALQVTE 297
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 48.4 bits (110), Expect = 5e-06
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Frame = +2
Query: 395 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 574
F+E+ + + G + T +Q + GK+ + A+TG+GK++A++LPAI
Sbjct: 330 FDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 389
Query: 575 I----NNQPPIRRGDGPIALVLAPTRELAQQI 658
+ N+ + + AL+L PTRELA QI
Sbjct: 390 VLKAMNSGKGVNKVAPIFALILCPTRELASQI 421
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 48.0 bits (109), Expect = 6e-06
Identities = 31/90 (34%), Positives = 51/90 (56%)
Frame = +2
Query: 413 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPP 592
PD ++ G+ G+++P+ IQ +G G +++ AQ+G+GKT + + ++
Sbjct: 50 PDLLR-GIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDISLV 108
Query: 593 IRRGDGPIALVLAPTRELAQQIQQVAADFG 682
+ ALVLAPTRELAQQI++V G
Sbjct: 109 QCQ-----ALVLAPTRELAQQIEKVMRALG 133
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 47.2 bits (107), Expect = 1e-05
Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 10/139 (7%)
Frame = +2
Query: 272 NKNFYDPH---PTVLKRSPYEVEEYRNNHEVTVSGVEVHNPI---QYFEEANFPDYVQQG 433
N+N D P + R ++ + ++ V E H+ I + F+E+ +
Sbjct: 330 NRNVTDEELYPPLDINRVREDLSKKQSVDNVMEEKQEPHDSIYSAKRFDESCISPLTLKA 389
Query: 434 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI----NNQPPIRR 601
+ G + T +Q + GK+ + A+TG+GK++A++LPAI + N+ + +
Sbjct: 390 LSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHK 449
Query: 602 GDGPIALVLAPTRELAQQI 658
L+L PTRELA QI
Sbjct: 450 VAPIFVLILCPTRELASQI 468
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 44.8 bits (101), Expect = 6e-05
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Frame = +2
Query: 416 DYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINN---- 583
D V ++ G+ P+ QA P +SGK+++ A+TGSGKT Y+ P I + N
Sbjct: 89 DNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALD 148
Query: 584 QPPIRRGDGP-----IALVLAPTRELAQQI 658
R + P I+L+L P L +Q+
Sbjct: 149 SEVTNREERPFPLKNISLILCPNVMLCEQV 178
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 43.2 bits (97), Expect = 2e-04
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Frame = +2
Query: 422 VQQGVKTMGYKEPTPIQAQGW--PIAMSG--KNLVGVAQTGSGKTLAYILPAIVHINNQP 589
+++ ++ MG P+Q W I G +++ + TGSGKTL+Y LP IV +
Sbjct: 32 LKKALENMGISSLFPVQVAVWHETIGPGGFERDICVNSPTGSGKTLSYALP-IVQLLASR 90
Query: 590 PIRRGDGPIALVLAPTRELAQQIQQV 667
P+R ALV+ PTR+LA Q++ V
Sbjct: 91 PVR---CLRALVVLPTRDLALQVKDV 113
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 42.7 bits (96), Expect = 2e-04
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Frame = +2
Query: 446 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-AL 622
G++ P+ +Q + P A+ G +++ A++G GKT ++L + I P G + AL
Sbjct: 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP------GQVSAL 118
Query: 623 VLAPTRELAQQI 658
VL TRELA QI
Sbjct: 119 VLCHTRELAYQI 130
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 42.7 bits (96), Expect = 2e-04
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Frame = +2
Query: 446 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-AL 622
G++ P+ +Q + P A+ G +++ A++G GKT ++L + I P G + AL
Sbjct: 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP------GQVSAL 118
Query: 623 VLAPTRELAQQI 658
VL TRELA QI
Sbjct: 119 VLCHTRELAYQI 130
>At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative several
putative ATP-dependent helicases
Length = 1058
Score = 35.5 bits (78), Expect = 0.035
Identities = 24/84 (28%), Positives = 38/84 (45%)
Frame = +2
Query: 425 QQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRG 604
+ +K +G QA+ A++GKN+ T SGK+L Y +P + +
Sbjct: 383 KSALKRIGLNTLYSHQAEAISAALAGKNVAVATMTSSGKSLCYNVPVF------EELCKD 436
Query: 605 DGPIALVLAPTRELAQQIQQVAAD 676
AL L PT+ LAQ + +D
Sbjct: 437 TNSCALYLFPTKALAQDQLRALSD 460
>At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA
Helicase [Arabidopsis thaliana] GI:10944747
Length = 606
Score = 31.1 bits (67), Expect = 0.76
Identities = 20/63 (31%), Positives = 26/63 (41%)
Frame = +2
Query: 377 HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYI 556
H Y E D + G K P+Q Q +M K+ + TG GK+L Y
Sbjct: 180 HETPSYEELQALDDLEFANLVIFGNKVFRPLQHQACRASMERKDCFVLMPTGGGKSLCYQ 239
Query: 557 LPA 565
LPA
Sbjct: 240 LPA 242
>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
DNA Helicase [Arabidopsis thaliana] GI:11121449
Length = 1188
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +2
Query: 437 KTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIV 571
K G P Q + MSG ++ + TG GK+L Y LPA++
Sbjct: 447 KVFGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALI 491
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 521 AQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 658
A++G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 7 AKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 47
>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
similar to SP|O94761 ATP-dependent DNA helicase Q4
(RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 911
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 446 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIV 571
GY Q Q + + G + + V TG+GK+L Y +PA++
Sbjct: 266 GYDSFRDGQLQAIKMILGGSSTMLVLPTGAGKSLCYQIPAMI 307
>At5g03940.1 68418.m00374 signal recognition particle 54 kDa
protein, chloroplast / 54 chloroplast protein / SRP54
(FFC) identical to Swiss-Prot:P37107 signal recognition
particle 54 kDa protein, chloroplast precursor (SRP54)
(54 chloroplast protein) (54CP) (FFC) [Arabidopsis
thaliana]
Length = 564
Score = 28.7 bits (61), Expect = 4.1
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Frame = +2
Query: 296 PTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEE---ANFPDYVQQGVKTMGYKEP-- 460
P + K SP ++ E N V + +EV P + A P+ ++ K G E
Sbjct: 429 PGMGKVSPAQIREAEKNLLVMEAMIEVMTPEERERPELLAESPERRKRIAKDSGKTEQQV 488
Query: 461 TPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPP 592
+ + AQ + + + KNL+GV + GS L+ + A+ PP
Sbjct: 489 SALVAQIFQMRVKMKNLMGVMEGGSIPALSGLEDALKAEQKAPP 532
>At3g04670.1 68416.m00500 WRKY family transcription factor similar
to elicitor response element binding protein WRKY3
isolog GB:AAB63078 [Arabidopsis thaliana]
Length = 330
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 657 ICCANSLVGAKTKAIGPSPLRI 592
ICC N L G T+ + P PL++
Sbjct: 79 ICCGNDLSGDYTQVLAPEPLQM 100
>At5g22960.1 68418.m02684 serine carboxypeptidase S10 family protein
similar to serine carboxypeptidase III [Precursor]
(SP:P37891) [Oryza sativa]
Length = 190
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = +2
Query: 236 RPDWDSVS--LQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHN 382
R D DSVS L F + F+ HP + K Y E H + VHN
Sbjct: 111 RHDEDSVSNDLYDFLQAFFKEHPNLAKDDFYITGESYAGHYIPALASRVHN 161
>At3g58430.1 68416.m06512 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains weak hit to Pfam PF00917: MATH
domain
Length = 552
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +3
Query: 69 SCLVTGIIAVETVVPNLEEATNSAIIRLDLATVAV 173
SC++ + +ET+ +LEE +N ++ D+A V
Sbjct: 382 SCMIFLLSLIETLCQSLEELSNEDLVEADIALTYV 416
>At3g56190.1 68416.m06245 alpha-soluble NSF attachment protein 2 /
alpha-SNAP2 / ASNAP2 identical to alpha-soluble NSF
attachment protein 2 / alpha-SNAP2 SP:Q9SPE6 from
[Arabidopsis thaliana]
Length = 289
Score = 27.9 bits (59), Expect = 7.1
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +1
Query: 478 RLADSYVWKEFSW-RSSNGFRQNVGLHLASHCAHKQPTAYSER*WSDCFGLGAYQRVSTT 654
+ A+SY + SW ++ + + HL S H AY+E + C Y++V T
Sbjct: 38 KAANSYKLAK-SWDQAGKAYLKLADCHLKSDSKHDAANAYAEA--AKC-----YKKVDTN 89
Query: 655 NSASCCRFWTHILC 696
+ASC +I C
Sbjct: 90 EAASCLERAVNIFC 103
>At5g52530.2 68418.m06518 dentin sialophosphoprotein-related
contains weak similarity to dentin sialophosphoprotein
precursor (Dentin matrix protein-3) (DMP- 3)
(Swiss-Prot:P97399) [Mus musculus]
Length = 828
Score = 27.5 bits (58), Expect = 9.4
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = +2
Query: 227 NMRRPDWDSVSLQPF--NKNFYDPHPTVLKRSPYEVEEYRNNH--EVTVSGVEVHNPIQY 394
+MRRP+ D+ +L+PF N+ F +P + + +E+ + R E T G +V ++
Sbjct: 752 SMRRPNSDNNNLRPFIPNRRFDNPEEST-GGNRFEMTQQRRTRRSETTEDGGDVIRRFKF 810
Query: 395 FEE 403
EE
Sbjct: 811 NEE 813
>At5g52530.1 68418.m06517 dentin sialophosphoprotein-related
contains weak similarity to dentin sialophosphoprotein
precursor (Dentin matrix protein-3) (DMP- 3)
(Swiss-Prot:P97399) [Mus musculus]
Length = 828
Score = 27.5 bits (58), Expect = 9.4
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = +2
Query: 227 NMRRPDWDSVSLQPF--NKNFYDPHPTVLKRSPYEVEEYRNNH--EVTVSGVEVHNPIQY 394
+MRRP+ D+ +L+PF N+ F +P + + +E+ + R E T G +V ++
Sbjct: 752 SMRRPNSDNNNLRPFIPNRRFDNPEEST-GGNRFEMTQQRRTRRSETTEDGGDVIRRFKF 810
Query: 395 FEE 403
EE
Sbjct: 811 NEE 813
>At5g48950.2 68418.m06055 thioesterase family protein contains Pfam
profile PF03061: thioesterase family protein
Length = 127
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +1
Query: 523 SNGFRQNVGLHLASHCAHKQPTAYSER*WSDCFGLGAYQRVSTTNSAS 666
++GF++ G+HL+ H H +P A E +++ F + + + T + S
Sbjct: 66 ASGFKRVAGIHLSIH--HLRPAALGEIVFAESFPVSVGKNIQTEDLKS 111
>At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1)
identical to RNA-dependent RNA polymerase [Arabidopsis
thaliana] gi|8248473|gb|AAF74208
Length = 1196
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 177 LEDLEDLVGKKNSLEVRTCVAQIGILFHSNLSTKTFMIH 293
+ D++ +GK V C A++G+ F S +T M H
Sbjct: 530 VSDIKTWMGKFKDKNVAKCAARMGLCFSSTYATVDVMPH 568
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 27.5 bits (58), Expect = 9.4
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -2
Query: 152 ETNYRRICCLLQIWNHRFHGYY 87
E + R+CC++ WN F+ +Y
Sbjct: 80 EEEFERVCCIVGPWNLSFNVFY 101
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 284 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 460
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 461 TPIQAQGWPIAMS 499
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 284 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 460
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 195 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 254
Query: 461 TPIQAQGWPIAMS 499
+P++ + P+ S
Sbjct: 255 SPVRDEYAPVIFS 267
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 284 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 460
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 461 TPIQAQGWPIAMS 499
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly
identical to DNA Helicase [Arabidopsis thaliana]
GI:11121445
Length = 705
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +2
Query: 494 MSGKNLVGVAQTGSGKTLAYILPAIV 571
M+G++++ + G GK+L Y LPA++
Sbjct: 102 MTGRDVLVIMAAGGGKSLCYQLPAML 127
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,664,044
Number of Sequences: 28952
Number of extensions: 302893
Number of successful extensions: 994
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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