Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0277
         (646 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    26   0.23 
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    26   0.23 
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    26   0.23 
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    26   0.23 
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    26   0.23 
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    26   0.23 
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           26   0.23 
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    26   0.23 
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    26   0.23 
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    24   1.2  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   6.6  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   6.6  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    21   6.6  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    21   6.6  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 195 SLVGVPKTLIISTNWSTPESPGNIG*PNNSSATTHPALHTSIFV 64
           S  GV     +STN + P S   +  P+NS+AT    L + + V
Sbjct: 106 SSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSV 149


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 195 SLVGVPKTLIISTNWSTPESPGNIG*PNNSSATTHPALHTSIFV 64
           S  GV     +STN + P S   +  P+NS+AT    L + + V
Sbjct: 106 SSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSV 149


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 195 SLVGVPKTLIISTNWSTPESPGNIG*PNNSSATTHPALHTSIFV 64
           S  GV     +STN + P S   +  P+NS+AT    L + + V
Sbjct: 106 SSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSV 149


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 195 SLVGVPKTLIISTNWSTPESPGNIG*PNNSSATTHPALHTSIFV 64
           S  GV     +STN + P S   +  P+NS+AT    L + + V
Sbjct: 106 SSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSV 149


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 195 SLVGVPKTLIISTNWSTPESPGNIG*PNNSSATTHPALHTSIFV 64
           S  GV     +STN + P S   +  P+NS+AT    L + + V
Sbjct: 106 SSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSV 149


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 195 SLVGVPKTLIISTNWSTPESPGNIG*PNNSSATTHPALHTSIFV 64
           S  GV     +STN + P S   +  P+NS+AT    L + + V
Sbjct: 62  SSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSV 105


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 195 SLVGVPKTLIISTNWSTPESPGNIG*PNNSSATTHPALHTSIFV 64
           S  GV     +STN + P S   +  P+NS+AT    L + + V
Sbjct: 106 SSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSV 149


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 195 SLVGVPKTLIISTNWSTPESPGNIG*PNNSSATTHPALHTSIFV 64
           S  GV     +STN + P S   +  P+NS+AT    L + + V
Sbjct: 106 SSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSV 149


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 195 SLVGVPKTLIISTNWSTPESPGNIG*PNNSSATTHPALHTSIFV 64
           S  GV     +STN + P S   +  P+NS+AT    L + + V
Sbjct: 106 SSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSV 149


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 59  YTTKIDVWSAGCVVAELL-LGQPIFPGDSGVDQLVEIIK 172
           YTT  DVWS G ++ E++ LG   + G     +L++ +K
Sbjct: 671 YTTYSDVWSFGVLLWEIVTLGGTPYVGVHS-SELLDFLK 708


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 12/51 (23%), Positives = 22/51 (43%)
 Frame = +2

Query: 182 TPTREQIREMNPNYTEFKFPQIKSHPWAKVFRACTPPDAISLVSRLLEYTP 334
           +P R  +   +P+       Q  S    K+   C+PP    ++S + +Y P
Sbjct: 97  SPHRIYMHPESPSKGSHWMNQDISFSRVKLTNTCSPPQGQLVLSSMHKYQP 147


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 398 TARLPNGRPLPPLFNFTEYE 457
           T+ +PN + +PP ++   YE
Sbjct: 26  TSDIPNAQQMPPHYSNYHYE 45


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 398 TARLPNGRPLPPLFNFTEYE 457
           T+ +PN + +PP ++   YE
Sbjct: 26  TSDIPNAQQMPPHYSNYHYE 45


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 398 TARLPNGRPLPPLFNFTEYE 457
           T+ +PN + +PP ++   YE
Sbjct: 26  TSDIPNAQQMPPHYSNYHYE 45


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,677
Number of Sequences: 336
Number of extensions: 2195
Number of successful extensions: 19
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16552695
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)