Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0277
         (646 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    31   0.010
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    28   0.067
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   1.9  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   2.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.8  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   7.7  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 31.1 bits (67), Expect = 0.010
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +2

Query: 23  YRAPELIFGATDYTTKIDVWSAGCVVAELLLGQPIFPG 136
           Y APE+I     +    D WS G ++ ELL G P F G
Sbjct: 531 YVAPEVILNK-GHDISADYWSLGVLMFELLTGTPPFTG 567


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 28.3 bits (60), Expect = 0.067
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 23  YRAPELIFGATDYTTKIDVWSAGCVVAELLLGQPIF 130
           Y +PE++     Y   +D+W+ G ++  LL+G P F
Sbjct: 78  YLSPEVL-KKEPYGKPVDIWACGVILYILLVGYPPF 112


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 59  YTTKIDVWSAGCVV 100
           Y   +DVW AGC++
Sbjct: 258 YVKALDVWMAGCMM 271


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 27  ALRSSSL-APPTTPRKLTCGARDALSLSCCWVNRYSQE 137
           A+R S+L   PT+  ++T  ++D L     W N  + E
Sbjct: 446 AVRMSALNVQPTSKGRITLNSKDPLDPPVIWSNDLATE 483


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +2

Query: 386 LREPTARLPNG 418
           +R+ TARLPNG
Sbjct: 662 VRDATARLPNG 672


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 167 IKVLGTPTREQIREMNPNYTE 229
           IK++ T   E  R  N NYTE
Sbjct: 5   IKIITTTGLENWRVNNSNYTE 25


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,288
Number of Sequences: 438
Number of extensions: 2888
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)