Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0275
         (358 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|...    76   2e-15
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   2.6  
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch...    25   3.5  
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    24   6.1  
SPAC22F8.12c |shf1||small histone ubiquitination factor Shf1|Sch...    24   6.1  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    24   6.1  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    24   8.0  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    24   8.0  
SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||...    24   8.0  
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit...    24   8.0  
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar...    24   8.0  

>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 565

 Score = 75.8 bits (178), Expect = 2e-15
 Identities = 42/97 (43%), Positives = 57/97 (58%), Gaps = 4/97 (4%)
 Frame = +1

Query: 79  LSGLDHLKHPGLNKGMAFTIEERQLLGIHGLLPPRVKTQEEQVELCKLSIDRY----ENP 246
           L G+  L  P  NK  AFT EERQ   I   LPP V+T ++QV+ C    D+Y    + P
Sbjct: 13  LKGVTLLNSPRYNKDTAFTPEERQKFEISSRLPPIVETLQQQVDRC---YDQYKAIGDEP 69

Query: 247 LNKYIYLMGLLDRNEHLFYRFVADNVAEMMPIVYTPT 357
           L K +YL  L   N+ LFY  ++ ++ EM+PI+YTPT
Sbjct: 70  LQKNLYLSQLSVTNQTLFYALISQHLIEMIPIIYTPT 106


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +2

Query: 245 HLTSTSILWGSWTAMSICS--TVSSRITW 325
           HL  TS++ G+W  +   S   VS  +TW
Sbjct: 71  HLNHTSVMTGNWNILPYPSFGKVSPNVTW 99


>SPAC343.17c |||WD repeat protein, human WDR70
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 576

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 156 GHTRVVTTTSQDARGAG*TMQALDRQI 236
           GH+++VTTT+ D  G+     +LD  I
Sbjct: 87  GHSKIVTTTTFDKNGSRFYTGSLDNTI 113


>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 418

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +2

Query: 182 ESRRKRSRLNYASSRSTDTKIHLTSTSILWGSWTAMSICSTVSSRI 319
           E  R+  + N ++S S D     TS +  WGSW +    S  SS +
Sbjct: 294 EKIRETKKKNSSTSLSPDP----TSDNFEWGSWVSSQDTSKNSSNL 335


>SPAC22F8.12c |shf1||small histone ubiquitination factor
           Shf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 165

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = +2

Query: 134 PSKSVSSWAYTGCYHHESRRKRSRLNYASSRSTDTKIHLTSTSI 265
           PS S +S  +   YH+      S      + STDT + L   ++
Sbjct: 55  PSSSTNSKEHNSPYHYRVPSNNSTRASFGAASTDTNVELPKINL 98


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +1

Query: 286  NEHLFYRFVADNVAEMMPIVYT 351
            N++  +RF  D + ++ P++YT
Sbjct: 1390 NDNSLFRFDIDQLRKLSPVIYT 1411


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 188 RRKRSRLNYASSRSTDTKIHLTSTSILW 271
           R +   LN +S  STD +I  T   +LW
Sbjct: 771 RNQLLHLNISSVSSTDLEIWKTPEGVLW 798


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 12/45 (26%), Positives = 19/45 (42%)
 Frame = +1

Query: 220 LSIDRYENPLNKYIYLMGLLDRNEHLFYRFVADNVAEMMPIVYTP 354
           L  D YE   N  ++    L+   H  Y +V  N + +    Y+P
Sbjct: 27  LRADNYEEIYNSLVHHEPDLEEAAHASYSWVVKNFSTLEDKTYSP 71


>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 9/37 (24%), Positives = 23/37 (62%)
 Frame = +1

Query: 70  TSGLSGLDHLKHPGLNKGMAFTIEERQLLGIHGLLPP 180
           T+ ++  +  +HP  ++   + + +R+++  HGL+PP
Sbjct: 89  TASVACCNCCRHP--SEACLYILNKRKVMSQHGLVPP 123


>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
           Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 139 EERQLLGIHGLLPPRVK 189
           ++RQLLGI    PP+VK
Sbjct: 318 QDRQLLGIEPPEPPKVK 334


>SPAC23D3.07 |pup1||20S proteasome component beta
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 15/62 (24%), Positives = 26/62 (41%)
 Frame = +1

Query: 160 IHGLLPPRVKTQEEQVELCKLSIDRYENPLNKYIYLMGLLDRNEHLFYRFVADNVAEMMP 339
           +H L   R       + + K  + RY+  +  Y+ L G   +  HLF    A   ++ +P
Sbjct: 100 LHSLYTNRKPRVVTALTMLKQHLFRYQGHIGAYLVLGGYDCKGPHLF-TIAAHGSSDKLP 158

Query: 340 IV 345
            V
Sbjct: 159 YV 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,550,047
Number of Sequences: 5004
Number of extensions: 29466
Number of successful extensions: 103
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)