Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0275
(358 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.) 108 1e-24
SB_94| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.006
SB_35067| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.6
SB_1675| Best HMM Match : ig (HMM E-Value=5.6e-05) 27 4.5
SB_4260| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5
SB_43834| Best HMM Match : Pox_A32 (HMM E-Value=0.0085) 27 5.9
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_14127| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 26 7.8
SB_11767| Best HMM Match : Kinesin (HMM E-Value=0) 26 7.8
>SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 674
Score = 108 bits (259), Expect = 1e-24
Identities = 52/93 (55%), Positives = 65/93 (69%)
Frame = +1
Query: 79 LSGLDHLKHPGLNKGMAFTIEERQLLGIHGLLPPRVKTQEEQVELCKLSIDRYENPLNKY 258
+ G D ++ LNKG+AFT+EERQ+LGIHGLLPP V +QE Q + + R N L KY
Sbjct: 60 IRGTDIMRDSHLNKGLAFTLEERQILGIHGLLPPCVISQEIQAQRVYRELQRKPNDLEKY 119
Query: 259 IYLMGLLDRNEHLFYRFVADNVAEMMPIVYTPT 357
I LM LL+RNE LF+R + D E+MPIVYTPT
Sbjct: 120 IQLMALLERNESLFFRVLFDYTEELMPIVYTPT 152
>SB_94| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 394
Score = 36.7 bits (81), Expect = 0.006
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +2
Query: 182 ESRRKRSRLNYASSRSTDTKIHLTSTSILWGSWTAMSICSTVSSRITWLK 331
++RRKRS SSR + K+ L T L+ SW +S+ V+ I W K
Sbjct: 179 QNRRKRSEFKIISSREEEKKLSLAKTCKLFQSWPKLSL-KKVAGLIRWRK 227
>SB_35067| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 612
Score = 27.9 bits (59), Expect = 2.6
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +1
Query: 115 NKGMAFTIEERQLLGIHGLLPPRVKTQEEQVELCKLSIDRYENPLNKYIYLM 270
N G+ + +R+L + PR QEE +E+ K Y + + +Y+ L+
Sbjct: 161 NSGVLVLLSQRRLKDYRNRIKPRRGFQEEVIEVLKAETSSYFD-VQRYVILL 211
>SB_1675| Best HMM Match : ig (HMM E-Value=5.6e-05)
Length = 964
Score = 27.1 bits (57), Expect = 4.5
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +2
Query: 128 LLPSKSVSSWAYTGCYHHESRRKRSRLNYASSRSTDTKIHLTSTSILWG 274
L+P SW T + R S+LN A +TD+ ++ + S +G
Sbjct: 252 LIPGTEGVSWKITFDTDFDENRVTSKLNIAKLNNTDSGLYQCNVSTKFG 300
>SB_4260| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 415
Score = 27.1 bits (57), Expect = 4.5
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Frame = -3
Query: 254 LLSGFSYLSIESLHS-STCSSCVLTRGGNN------PCMPKS*RSSMVKAMPLLRPGCLR 96
+L + S SL S +T + T NN PC K S V+ PL+ CLR
Sbjct: 330 ILQKMTQSSANSLISEATLAGMTFTNNRNNIWPTTVPCKTKDSTSDQVEDEPLMTTRCLR 389
Query: 95 WSRPERPLV 69
+ R R V
Sbjct: 390 FVRKSRSKV 398
>SB_43834| Best HMM Match : Pox_A32 (HMM E-Value=0.0085)
Length = 1227
Score = 26.6 bits (56), Expect = 5.9
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Frame = +1
Query: 61 GQPTSGLSGLDHLKHPGLNK--GMAFTIE-ERQLLGIHGLLPPRVKTQEEQVELCKLSID 231
G+ +G + K LN G+ +T+ + LL HG+L PR ++ E+ ++D
Sbjct: 275 GRNLAGDKATSNAKENALNAAHGVKYTVPLDHSLLTDHGVLYPRALSEALLFEITLATVD 334
Query: 232 R--YENPLNKYIYLMGLLDRNEHLFYRFVADN 321
+ E+ K Y G+ +N L Y + DN
Sbjct: 335 QVVVESDATKLYY--GI--KNLELEYESLRDN 362
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 26.6 bits (56), Expect = 5.9
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = -3
Query: 191 VLTRGGNNPCMPKS*-RSSMVKA-MP--LLRPGCLRWSRPERPLVGCPSPEPHNPIR 33
V + G NN +P S + MV++ MP L PG + +RP PSP+P P R
Sbjct: 2753 VSSPGPNNQALPWSQDQQGMVRSGMPGAPLMPGMMPIQPLQRPEGVAPSPKPEKPQR 2809
>SB_14127| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1185
Score = 26.6 bits (56), Expect = 5.9
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 196 EEQVELCKLSIDRYENPLNKYIYLMGLLDRNEHLFY 303
E+ + LCK + YEN L ++ L +L R+E FY
Sbjct: 3 EKGIALCKELAELYENELYDFVRLSEIL-RSEAKFY 37
>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 6725
Score = 26.2 bits (55), Expect = 7.8
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +1
Query: 139 EERQLLGIHGLLPPRVKTQEEQVELCKLSIDRYE 240
E ++LLG GL PP E QV+ C SI +E
Sbjct: 2129 ERQRLLGWSGLAPPGSFVPECQVDGCYDSIQCHE 2162
>SB_11767| Best HMM Match : Kinesin (HMM E-Value=0)
Length = 1230
Score = 26.2 bits (55), Expect = 7.8
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 176 HHESRRKRSRLNYASSRSTDTKIHLTSTSILWGSWTAMSICSTVSS 313
HH R R YA +T T H T+TS + T+++ C+T S+
Sbjct: 151 HHNIFRALYRNIYAHCTTTSTA-HCTATSTAHCTATSIAHCTTTST 195
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,283,727
Number of Sequences: 59808
Number of extensions: 252545
Number of successful extensions: 720
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 560496285
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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