Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0274
(720 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7927| Best HMM Match : No HMM Matches (HMM E-Value=.) 202 2e-52
SB_14133| Best HMM Match : TGS (HMM E-Value=2.2e-36) 44 2e-04
SB_56785| Best HMM Match : TGS (HMM E-Value=6.2e-31) 42 5e-04
SB_2976| Best HMM Match : MMR_HSR1 (HMM E-Value=1.8e-19) 39 0.004
SB_24089| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.058
SB_43010| Best HMM Match : MMR_HSR1 (HMM E-Value=1.9e-05) 34 0.13
SB_32162| Best HMM Match : Ras (HMM E-Value=4.7e-31) 32 0.54
SB_57810| Best HMM Match : MMR_HSR1 (HMM E-Value=3.6e-07) 31 0.71
SB_30377| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_43986| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_7100| Best HMM Match : zf-DBF (HMM E-Value=2.6e-09) 29 2.9
SB_6025| Best HMM Match : MMR_HSR1 (HMM E-Value=1.1e-17) 29 3.8
SB_40334| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_16017| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-19) 28 6.6
SB_38444| Best HMM Match : TMS_TDE (HMM E-Value=0) 28 8.8
SB_7983| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_5246| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
>SB_7927| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 555
Score = 202 bits (493), Expect = 2e-52
Identities = 101/155 (65%), Positives = 115/155 (74%)
Frame = +1
Query: 256 PKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYGDSLYRCKQL 435
P DVHPFYADLMNVLYDKDHYKL LGQ+NTAR+LID + C +
Sbjct: 13 PTAKDVHPFYADLMNVLYDKDHYKLALGQINTARNLIDKM----------------CTIM 56
Query: 436 KRAALGRMATIMKRQGANLTYLEQVRQHLARLPSIDPYTRTIIICGFPNVGKSSFINKIT 615
K RQ +L YLEQVRQHL+RLPSIDP TRT+++CGFPNVGKSSF+NK+T
Sbjct: 57 K------------RQNQSLQYLEQVRQHLSRLPSIDPNTRTLLVCGFPNVGKSSFMNKVT 104
Query: 616 RADVEVQPYAFTTKSLYVGHTDYKYLRWQVIDTPG 720
RADV+VQPYAFTTKSL+VGH DYKYLRWQV+DTPG
Sbjct: 105 RADVDVQPYAFTTKSLFVGHMDYKYLRWQVVDTPG 139
Score = 32.7 bits (71), Expect = 0.31
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +1
Query: 49 MSLYNFKKIAVVPTAKD 99
M+ YNFKKI VVPTAKD
Sbjct: 1 MAHYNFKKITVVPTAKD 17
>SB_14133| Best HMM Match : TGS (HMM E-Value=2.2e-36)
Length = 365
Score = 43.6 bits (98), Expect = 2e-04
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = +1
Query: 559 IIICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTDYKYLRWQVIDTPG 720
+ + GFP+VGKS+ + K+T+ Y FTT + G +Y Q++D PG
Sbjct: 66 VALIGFPSVGKSTLLTKLTQTQSACASYEFTTLTCIPGVINYNGANIQLLDLPG 119
>SB_56785| Best HMM Match : TGS (HMM E-Value=6.2e-31)
Length = 303
Score = 41.9 bits (94), Expect = 5e-04
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = +1
Query: 571 GFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTDYKYLRWQVIDTPG 720
GFP+VGKS+ + + EV Y FTT + G YK + Q++D PG
Sbjct: 55 GFPSVGKSTLLTNLAGVYSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPG 104
>SB_2976| Best HMM Match : MMR_HSR1 (HMM E-Value=1.8e-19)
Length = 255
Score = 39.1 bits (87), Expect = 0.004
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = +1
Query: 571 GFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTDY 684
GFPN GKS+ + I+RA V Y FTT + VG +Y
Sbjct: 2 GFPNAGKSTLLRAISRATPTVAAYPFTTLNPSVGMVEY 39
>SB_24089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 693
Score = 35.1 bits (77), Expect = 0.058
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +1
Query: 556 TIIICGFPNVGKSSFINKITRA-DVEVQPYAFTTKSLYVGHTDYKYLRWQVIDTPG 720
T+ + GFPNVGKSS IN + R+ V TKS+ D K+++ ++D+PG
Sbjct: 457 TVGVVGFPNVGKSSIINSLKRSRTCTVGATPGVTKSMQEVQLD-KHIK--LLDSPG 509
>SB_43010| Best HMM Match : MMR_HSR1 (HMM E-Value=1.9e-05)
Length = 141
Score = 33.9 bits (74), Expect = 0.13
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 559 IIICGFPNVGKSSFINKITRADVEVQPYAFTT 654
+ + GFP+VGKS+ + K+T+ Y FTT
Sbjct: 66 VALIGFPSVGKSTLLTKLTQTQSACASYEFTT 97
>SB_32162| Best HMM Match : Ras (HMM E-Value=4.7e-31)
Length = 357
Score = 31.9 bits (69), Expect = 0.54
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = +1
Query: 559 IIICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTDYKYLRWQVIDTPG 720
+++ G NVGK+SF+ +T+ ++E P AF L + K+L + DT G
Sbjct: 9 VVLTGDNNVGKTSFLINLTQNELEGTPTAFANYELGLEVGSQKFL-LDLWDTEG 61
>SB_57810| Best HMM Match : MMR_HSR1 (HMM E-Value=3.6e-07)
Length = 299
Score = 31.5 bits (68), Expect = 0.71
Identities = 26/57 (45%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +1
Query: 511 RQHLARLPSIDPYTRTIIICGFPNVGKSSFINKITRA-DVEVQPYAFTTKSL-YVGH 675
R +A LP D T TI + G+PNVGKSS IN I ++ V V TK YV H
Sbjct: 149 RNAVADLPE-DALT-TIGLVGYPNVGKSSTINTILQSKKVAVSSTPGRTKHFQYVCH 203
>SB_30377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 454
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 565 ICGFPNVGKSSFINKITRADV-EVQPYAFTTK 657
+ G+PNVGKSS IN + V +V P A TK
Sbjct: 172 LIGYPNVGKSSIINTLKAKKVCKVAPIAGETK 203
>SB_43986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Frame = +1
Query: 442 AALGRMATIMKRQGANLTYLEQVRQHLARLPSIDPYTR--TIIICGFPN 582
+ LG++ ++ AN Y+E+++ A+L S++ YTR +I I G P+
Sbjct: 68 STLGKLVVRVEENAANEEYIEKLK---AKLDSLEQYTRKNSIEIAGMPS 113
>SB_7100| Best HMM Match : zf-DBF (HMM E-Value=2.6e-09)
Length = 242
Score = 29.5 bits (63), Expect = 2.9
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Frame = +1
Query: 82 VPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVKYTQQNFHDRLSRIIQEFPK 261
V +A+DF+ S T R +++ ++RG +I KV+ +N+ L + ++ +P+
Sbjct: 66 VISAEDFLKWAESNTSRAGTGKRQASHRVRKLRGAFI-KVEDQSRNYRP-LFKEMKSWPR 123
Query: 262 LD-DVHPFYADLMNVLYDKDHYKLGLGQLNTARHLI 366
L+ D P Y +V K K + AR +
Sbjct: 124 LNFDAPPGYGPFDDVTAPKTRAKSSSSEPRQARKCV 159
>SB_6025| Best HMM Match : MMR_HSR1 (HMM E-Value=1.1e-17)
Length = 98
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 559 IIICGFPNVGKSSFINKIT-RADVEVQPYAFTTKSLYVGHTDYKYLRWQVIDTPG 720
+ + G PNVGKS+ +N+I R VQ T+ ++ ++ ++DT G
Sbjct: 24 VAVVGRPNVGKSTLVNRILGRRAAVVQDVPGVTRDRVSYDAEWSGRQFVLVDTGG 78
>SB_40334| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1061
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/64 (25%), Positives = 32/64 (50%)
Frame = +1
Query: 328 LGLGQLNTARHLIDNVAKDYVRLLKYGDSLYRCKQLKRAALGRMATIMKRQGANLTYLEQ 507
LGLGQ+ AR ++N ++ + ++LK Y ++ + + ++KR+ A +
Sbjct: 277 LGLGQMYIARRDLNNASQCFEKVLKAMPGNYETMKILGSLYSPSSDLVKRELARQHLKKV 336
Query: 508 VRQH 519
QH
Sbjct: 337 TEQH 340
>SB_16017| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-19)
Length = 879
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/36 (50%), Positives = 22/36 (61%)
Frame = +2
Query: 137 LLQSFTSIIKYQEYVGFILEK*NIPSRTSTTDCPEL 244
L++S+ IIK QE GFI EK PS S DC E+
Sbjct: 534 LMKSYDDIIKEQEARGFI-EK--APSTPSLNDCLEV 566
>SB_38444| Best HMM Match : TMS_TDE (HMM E-Value=0)
Length = 1031
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 275 WTSSNFGNS*IILDSRSWKFCWV 207
W S N GNS ++ SRSW W+
Sbjct: 793 WYSPNEGNSSLLRLSRSWPAVWI 815
>SB_7983| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 836
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 456 HGHHHETARS*SYIPGTGPSTFSTFTIDRSLHQDDNH 566
H HHH +A + +I T PS ST + R H +H
Sbjct: 35 HPHHHHSAITTIHIITTVPSPTSTSSSQRYHHHPHHH 71
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 456 HGHHHETARS*SYIPGTGPSTFSTFTIDRSLHQDDNH 566
H HHH +A + +I T PS ST + R H +H
Sbjct: 67 HPHHHHSAITTIHIIITAPSPPSTSSSQRHHHHPHHH 103
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 456 HGHHHETARS*SYIPGTGPSTFSTFTIDRSLHQDDNH 566
H HHH +A + +I T PS ST + R H +H
Sbjct: 229 HPHHHHSAITTIHIIITAPSPPSTSSSQRHHHHPHHH 265
>SB_5246| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = +1
Query: 262 LDDVHPFYADLMNVLYDKDHYKLG---LGQLNTARHLI 366
LDD F +L N L++++ KLG G+L A HL+
Sbjct: 483 LDDGRQFTTELFNTLHEEELAKLGGPSKGKLGQASHLL 520
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,305,359
Number of Sequences: 59808
Number of extensions: 500291
Number of successful extensions: 1054
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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